Structural dissection of human metapneumovirus phosphoprotein using small angle x-ray scattering

Sci Rep. 2017 Nov 1;7(1):14865. doi: 10.1038/s41598-017-14448-z.

Abstract

The phosphoprotein (P) is the main and essential cofactor of the RNA polymerase (L) of non-segmented, negative-strand RNA viruses. P positions the viral polymerase onto its nucleoprotein-RNA template and acts as a chaperone of the nucleoprotein (N), thereby preventing nonspecific encapsidation of cellular RNAs. The phosphoprotein of human metapneumovirus (HMPV) forms homotetramers composed of a stable oligomerization domain (Pcore) flanked by large intrinsically disordered regions (IDRs). Here we combined x-ray crystallography of Pcore with small angle x-ray scattering (SAXS)-based ensemble modeling of the full-length P protein and several of its fragments to provide a structural description of P that captures its dynamic character, and highlights the presence of varyingly stable structural elements within the IDRs. We discuss the implications of the structural properties of HMPV P for the assembly and functioning of the viral transcription/replication machinery.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • DNA-Directed RNA Polymerases / metabolism
  • Humans
  • Metapneumovirus / chemistry*
  • Nucleoproteins / metabolism
  • Phosphoproteins / chemistry*
  • Phosphoproteins / metabolism
  • Protein Stability
  • Scattering, Small Angle
  • Viral Proteins / chemistry
  • Viral Proteins / metabolism
  • Virus Replication
  • X-Ray Diffraction

Substances

  • Nucleoproteins
  • Phosphoproteins
  • Viral Proteins
  • DNA-Directed RNA Polymerases