Gordonia phthalatica sp. nov., a di-n-butyl phthalate-degrading bacterium isolated from activated sludge

Int J Syst Evol Microbiol. 2017 Dec;67(12):5128-5133. doi: 10.1099/ijsem.0.002430. Epub 2017 Oct 25.

Abstract

A phthalate esters-degrading bacterial strain, designated QH-11T, was isolated from an activated sludge wastewater treatment plant in Beijing, PR China. The cells were aerobic, Gram-stain-positive, non-motile, catalase-positive, oxidase-negative, short rods and formed white colonies on trypticase soy agar. This isolate contained meso-diaminopimelic acid as the diagnostic diamino acid and whole-cell hydrolysates contained arabinose and ribose. Diphosphatidylglycerol and phosphatidylethanolamine were the predominant polar lipids. According to the results of full-length of 16S rRNA gene sequence analysis, QH-11T represented a member of the genus Gordonia and showed the highest sequence similarity to Gordonia hydrophobica DSM 44015T (99.2 %), but was distinguishable by a low level of DNA-DNA relatedness (37.8 %). Genome-based comparisons indicated a clear distinction from the top ten most similar type strains (16S rRNA gene sequence) with pairwise average nucleotide identities (ANI) between 74.6 and 83.4 %. The predominant respiratory quinone was MK-9(H2), the mycolic acids present had 56 to 62 carbon atoms, and the major fatty acids were C16 : 0 (33.3 %), C17 : 1ω8c (23.4 %) and C18 : 1ω9c (17.9 %). The DNA G+C content was 68.0 mol%. On the basis of the results of DNA-DNA hybridization, ANI and physiological and biochemical tests, it is proposed that QH-11T represents a novel species of the genus Gordonia, for which the name Gordonia phthalatica sp. nov. is proposed. The type strain is QH-11T (CICC 24107T =KCTC 39933T).

Keywords: Gordonia phthalatica; activated sludge; biodegradation; phthalate esters.

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Beijing
  • DNA, Bacterial / genetics
  • Diaminopimelic Acid / chemistry
  • Dibutyl Phthalate / metabolism*
  • Fatty Acids / chemistry
  • Gordonia Bacterium / classification*
  • Gordonia Bacterium / genetics
  • Gordonia Bacterium / isolation & purification
  • Mycolic Acids / chemistry
  • Nucleic Acid Hybridization
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sewage / microbiology*
  • Vitamin K 2 / analogs & derivatives
  • Vitamin K 2 / chemistry
  • Wastewater / microbiology

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Mycolic Acids
  • RNA, Ribosomal, 16S
  • Sewage
  • Waste Water
  • Vitamin K 2
  • Dibutyl Phthalate
  • menaquinone 9
  • Diaminopimelic Acid