Nioella aestuarii sp. nov., of the family Rhodobacteraceae, isolated from tidal flat

Int J Syst Evol Microbiol. 2017 Dec;67(12):5205-5210. doi: 10.1099/ijsem.0.002442. Epub 2017 Oct 23.

Abstract

A bacterium, designated strain MME-018T, was isolated from a tidal flat of the Muui-do in the Republic of Korea and identified within the family Rhodobacteraceae. The 16S rRNA gene sequence of the isolate showed the highest similarity to that of Nioella sediminis JS7-11T (98.9 %), followed by Nioella nitratireducens SSW136T (97.1 %). In phylogenetic analyses, these taxa formed a clade at neighbour-joining, maximum-likelihood, and maximum-parsimony algorithms, in which it was separated from other genus belonging to the family Rhodobacteraceae. Ubiquinone-10 (Q-10) was the major respiratory quinone. Major polar lipids included phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, two unidentified phospholipids, and an unidentified lipid. Major fatty acids were summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c) C16 : 0, cyclo C19 : 0ω8c, and 11-methyl C18 : 1ω7c. Genomic DNA G+C content was 61 mol%. Cells were Gram-stain negative, non-motile, aerobic, and rod-shaped. This strain grew in 1‒4 % (w/v) NaCl, at 4-40 °C and pH 6.0‒8.0, with optimal growth in 2 % (w/v) NaCl, at 25‒30 °C and pH 7.0. DNA-DNA hybridization values between strain MME-018T and Nioella sediminis KCTC 42144T and Nioella nitratireducens KCTC 32417T were 17±3 and 13±1 %, respectively. On the basis of polyphasic taxonomic analysis, strain MME-018T is proposed to represent a novel species of the genus Nioella, for which the name Nioellaaestuarii sp. nov. The type strain of Nioellaaestuarii is MME-018T (=KCCM 43135T=JCM 30752T).

Keywords: Nioella aestuarii; Rhodobacteraceae; polyphasic taxonomy; tidal flat.

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / genetics
  • Fatty Acids / chemistry
  • Geologic Sediments / microbiology*
  • Nucleic Acid Hybridization
  • Phospholipids / chemistry
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Republic of Korea
  • Rhodobacteraceae / classification*
  • Rhodobacteraceae / genetics
  • Rhodobacteraceae / isolation & purification
  • Seawater / microbiology*
  • Sequence Analysis, DNA
  • Ubiquinone / analogs & derivatives
  • Ubiquinone / chemistry

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Phospholipids
  • RNA, Ribosomal, 16S
  • Ubiquinone
  • coenzyme Q10