Structural and thermodynamic analyses reveal critical features of glycopeptide recognition by the human PILRα immune cell receptor

J Biol Chem. 2017 Dec 22;292(51):21128-21136. doi: 10.1074/jbc.M117.799239. Epub 2017 Oct 18.

Abstract

Before entering host cells, herpes simplex virus-1 uses its envelope glycoprotein B to bind paired immunoglobulin-like type 2 receptor α (PILRα) on immune cells. PILRα belongs to the Siglec (sialic acid (SA)-binding immunoglobulin-like lectin)-like family, members of which bind SA. PILRα is the only Siglec member to recognize not only the sialylated O-linked sugar T antigen (sTn) but also its attached peptide region. We previously determined the crystal structure of PILRα complexed with the sTn-linked glycopeptide of glycoprotein B, revealing the simultaneous recognition of sTn and peptide by the receptor. However, the contribution of each glycopeptide component to PILRα binding was largely unclear. Here, we chemically synthesized glycopeptide derivatives and determined the thermodynamic parameters of their interaction with PILRα. We show that glycopeptides with different sugar units linking SA and peptides (i.e. "GlcNAc-type" and "deoxy-GlcNAc-type" glycopeptides) have lower affinity and more enthalpy-driven binding than the wild type (i.e. GalNAc-type glycopeptide). The crystal structures of PILRα complexed with these glycopeptides highlighted the importance of stereochemical positioning of the O4 atom of the sugar moiety. These results provide insights both for understanding the unique O-glycosylated peptide recognition by the PILRα and for the rational design of herpes simplex virus-1 entry inhibitors.

Keywords: X-ray crystallography; cell surface receptor; immunology; isothermal titration calorimetry (ITC); protein chemistry; protein structure.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylgalactosamine / analogs & derivatives
  • Acetylgalactosamine / chemistry
  • Acetylgalactosamine / metabolism
  • Binding Sites
  • Calorimetry
  • Crystallography, X-Ray
  • Escherichia coli / metabolism
  • Humans
  • Kinetics
  • Ligands
  • Membrane Glycoproteins / chemistry
  • Membrane Glycoproteins / genetics
  • Membrane Glycoproteins / metabolism*
  • Models, Molecular*
  • Peptide Fragments / chemical synthesis
  • Peptide Fragments / chemistry
  • Peptide Fragments / genetics
  • Peptide Fragments / metabolism*
  • Polysaccharides / chemical synthesis
  • Polysaccharides / chemistry
  • Polysaccharides / metabolism
  • Protein Conformation
  • Protein Interaction Domains and Motifs
  • Receptors, Immunologic / chemistry
  • Receptors, Immunologic / genetics
  • Receptors, Immunologic / metabolism*
  • Recombinant Proteins
  • Stereoisomerism
  • Thermodynamics
  • Viral Envelope Proteins / chemical synthesis
  • Viral Envelope Proteins / chemistry
  • Viral Envelope Proteins / metabolism*

Substances

  • Ligands
  • Membrane Glycoproteins
  • PILRA protein, human
  • Peptide Fragments
  • Polysaccharides
  • Receptors, Immunologic
  • Recombinant Proteins
  • Viral Envelope Proteins
  • glycoprotein B, Simplexvirus
  • Acetylgalactosamine

Associated data

  • PDB/3VW0
  • PDB/3WUZ
  • PDB/3WV0
  • PDB/4NFB
  • PDB/4NFC
  • PDB/5XOF
  • PDB/5XO2