Chitinophaga salinisoli sp. nov., isolated from saline soil

Antonie Van Leeuwenhoek. 2018 Feb;111(2):265-273. doi: 10.1007/s10482-017-0947-y. Epub 2017 Oct 4.

Abstract

A novel aerobic bacterium, designated strain LAM9153T, was isolated from a saline soil sample collected from Lingxian County, Shandong Province, China. Cells of strain LAM9153T were observed to be Gram-stain negative, non-motile, non-spore-forming and rod-shaped. The new isolate grew optimally at 30-35 °C, pH 7.0 and 0.5% of NaCl concentration (w/v). According to the phylogenetic analysis based on the 16S rRNA gene sequence, strain LAM9153T shares high similarity with Chitinophaga terrae Gsoil 238T (96.9%) and Chitinophaga niabensis JS 13-10T (95.9%), forming a subcluster with C. terrae Gsoil 238T, Chitinophaga cymbidii R156-2T, C. niabensis JS 13-10T and Chitinophaga soli Gsoil 219T in the phylogenetic tree. The major cellular fatty acids (> 10%) were identified as iso-C15:0, iso-C17:0 3-OH and summed features 3 (C16:1 ω6c and/or C16:1 ω7c). The predominant respiratory quinone was identified as menaquinone MK-7. The polar lipids consisted of phosphatidylethanolamine, aminophospholipid, three unidentified aminolipids and five unidentified lipids. The genomic DNA G+C content was determined to be 53.2 ± 1.6 mol%. On the basis of phylogenetic, chemotaxonomic and phenotypic data, strain LAM9153T is concluded to represent a novel species of the genus Chitinophaga, for which the name Chitinophaga salinisoli sp. nov. is proposed. The type strain is LAM9153T (= ACCC 19960T = JCM 30847T).

Keywords: 16S rRNA gene; Chitinophaga salinisoli sp. nov.; Polyphasic taxonomy; Saline soil.

MeSH terms

  • Bacteroidetes / classification*
  • Bacteroidetes / cytology
  • Bacteroidetes / isolation & purification
  • Bacteroidetes / physiology
  • Base Composition
  • Metabolomics / methods
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Salinity*
  • Sequence Analysis, DNA
  • Soil / chemistry*
  • Soil Microbiology*

Substances

  • RNA, Ribosomal, 16S
  • Soil