Unexpected beauty and diversity in the structures of three homologous 4,5-dialkoxy-1-ethynyl-2-nitrobenzenes: the subtle interplay between intermolecular C-H...O hydrogen bonds and alkyl chain length

Acta Crystallogr C Struct Chem. 2017 Oct 1;73(Pt 10):814-819. doi: 10.1107/S2053229617012761. Epub 2017 Sep 29.

Abstract

The synthesis, 1H and 13C NMR spectra, and X-ray structures are described for three dialkoxy ethynylnitrobenzenes that differ only in the length of the alkoxy chain, namely 1-ethynyl-2-nitro-4,5-dipropoxybenzene, C14H17NO4, 1,2-dibutoxy-4-ethynyl-5-nitrobenzene, C16H21NO4, and 1-ethynyl-2-nitro-4,5-dipentoxybenzene, C18H25NO4. Despite the subtle changes in molecular structure, the crystal structures of the three compounds display great diversity. Thus, 1-ethynyl-2-nitro-4,5-dipropoxybenzene crystallizes in the trigonal crystal system in the space group R-3, with Z = 18, 1,2-dibutoxy-4-ethynyl-5-nitrobenzene crystallizes in the monoclinic crystal system in the space group P21/c, with Z = 4, and 1-ethynyl-2-nitro-4,5-dipentoxybenzene crystallizes in the triclinic crystal system in the space group P-1, with Z = 2. The crystal structure of 1-ethynyl-2-nitro-4,5-dipropoxybenzene is dominated by planar hexamers formed by a bifurcated alkoxy sp-C-H...O,O' interaction, while the structure of the dibutoxy analogue is dominated by planar ribbons of molecules linked by a similar bifurcated alkoxy sp-C-H...O,O' interaction. In contrast, the dipentoxy analogue forms ribbons of molecules alternately connected by a self-complementary sp-C-H...O2N interaction and a self-complementary sp2-C-H...O2N interaction. Disordered solvent was included in the crystals of 1-ethynyl-2-nitro-4,5-dipropoxybenzene and its contribution was removed during refinement.

Keywords: SQUEEZE; crystal structure; hydrogen bonding; hydrogen-bonded dimers; hydrogen-bonded hexamers; self-complementary hydrogen bonds.

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