MetExploreViz: web component for interactive metabolic network visualization

Maxime Chazalviel; Clément Frainay; Nathalie Poupin; Florence Vinson; Benjamin Merlet; Yoann Gloaguen; Ludovic Cottret; Fabien Jourdan

doi:10.1093/bioinformatics/btx588

MetExploreViz: web component for interactive metabolic network visualization

Bioinformatics. 2018 Jan 15;34(2):312-313. doi: 10.1093/bioinformatics/btx588.

Authors

Maxime Chazalviel^{1

2}, Clément Frainay¹, Nathalie Poupin¹, Florence Vinson¹, Benjamin Merlet¹, Yoann Gloaguen³, Ludovic Cottret⁴, Fabien Jourdan¹

Affiliations

¹ Toxalim, Université de Toulouse, INRA, Université de Toulouse 3 Paul Sabatier, Toulouse, France.
² MedDay Pharmaceuticals, Paris, France.
³ Glasgow Polyomics, College of Medical, Veterinary and Life Sciences, University of Glasgow, Wolfson Wohl Cancer Research Centre, Gascube Campus, Bearsden, UK.
⁴ LIPM, Université de Toulouse, INRA, CNRS, Castanet-Tolosan, France.

Abstract

Summary: MetExploreViz is an open source web component that can be easily embedded in any web site. It provides features dedicated to the visualization of metabolic networks and pathways and thus offers a flexible solution to analyse omics data in a biochemical context.

Availability and implementation: Documentation and link to GIT code repository (GPL 3.0 license) are available at this URL: http://metexplore.toulouse.inra.fr/metexploreViz/doc/.

Grants and funding

WT_/Wellcome Trust/United Kingdom