The 3'-UTR (CA)n microsatellite on CD40LG gene as a possible genetic marker for rheumatoid arthritis in Mexican population: impact on CD40LG mRNA expression

Clin Rheumatol. 2018 Feb;37(2):345-353. doi: 10.1007/s10067-017-3853-9. Epub 2017 Sep 30.

Abstract

The objective of this study was to determine the association of the CD40LG 3'-UTR (CA)n microsatellite with rheumatoid arthritis (RA) and CD40LG mRNA levels in females from western Mexico. A case-control study with 219 RA patients and 175 control subjects (CS) was conducted. Genotyping was performed by polymerase chain reaction (PCR), X 2 test was used to compare genotype and allele frequencies, and odds ratios and 95% confidence intervals were calculated to evaluate the association between RA and the microsatellite. CD40LG mRNA expression was assessed by real-time quantitative PCR. For comparisons between groups, Kruskal-Wallis or Mann-Whitney U tests for non-parametric data and ANOVA test for parametric data were performed. Among the 13 different alleles identified, CA25 was the most represented (45.4% RA and 46.3% CS). Stratification according to CA repeats as <CA25, CA25, and >CA25 showed a tendency towards a higher frequency of >CA25 alleles in RA patients (29%) compared to CS (23.4%). There was no association between any genotype and the clinical parameters of RA patients. According to the 2-∆∆Cq method, CD40LG mRNA expression in RA patients was 4.5-fold higher compared to CS; this difference was significant when assessed by the 2-∆Cq method (p = 0.028). Compared to carriers of the CA25/CA25 genotype, CS carrying the <CA25/<CA25 genotypes showed greater CD40LG mRNA expression (9.97-fold), unlike RA patients, where expression was 2.55-fold higher for >CA25/>CA25 carriers. The 3'-UTR CD40LG (CA)n microsatellite is not a genetic marker for RA in western Mexican population; however, results suggest that it plays a role in the CD40LG mRNA expression.

Keywords: CD40L; Polymorphism; Rheumatoid arthritis; qPCR.

MeSH terms

  • 3' Untranslated Regions*
  • Adult
  • Alleles
  • Arthritis, Rheumatoid / diagnosis*
  • Arthritis, Rheumatoid / genetics
  • CD40 Ligand / genetics*
  • Case-Control Studies
  • Female
  • Gene Frequency
  • Genetic Association Studies
  • Genetic Markers*
  • Genetic Predisposition to Disease
  • Genotype
  • Humans
  • Mexico
  • Microsatellite Repeats*
  • Middle Aged
  • Polymorphism, Single Nucleotide
  • RNA, Messenger / genetics

Substances

  • 3' Untranslated Regions
  • Genetic Markers
  • RNA, Messenger
  • CD40 Ligand