Fully Bayesian spectral methods for imaging data

Biometrics. 2018 Jun;74(2):645-652. doi: 10.1111/biom.12782. Epub 2017 Sep 28.

Abstract

Medical imaging data with thousands of spatially correlated data points are common in many fields. Methods that account for spatial correlation often require cumbersome matrix evaluations which are prohibitive for data of this size, and thus current work has either used low-rank approximations or analyzed data in blocks. We propose a method that accounts for nonstationarity, functional connectivity of distant regions of interest, and local signals, and can be applied to large multi-subject datasets using spectral methods combined with Markov Chain Monte Carlo sampling. We illustrate using simulated data that properly accounting for spatial dependence improves precision of estimates and yields valid statistical inference. We apply the new approach to study associations between cortical thickness and Alzheimer's disease, and find several regions of the cortex where patients with Alzheimer's disease are thinner on average than healthy controls.

Keywords: Functional connectivity; Markov chain Monte Carlo; Matérn correlation; Shrinkage priors; Spherical harmonics.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Alzheimer Disease / diagnostic imaging
  • Bayes Theorem*
  • Case-Control Studies
  • Cerebral Cortex / diagnostic imaging
  • Cerebral Cortex / pathology
  • Computer Simulation
  • Data Interpretation, Statistical*
  • Datasets as Topic
  • Diagnostic Imaging / methods*
  • Humans
  • Markov Chains
  • Monte Carlo Method
  • Spectrum Analysis