Identification and expression of GRAS family genes in maize (Zea mays L.)

PLoS One. 2017 Sep 28;12(9):e0185418. doi: 10.1371/journal.pone.0185418. eCollection 2017.

Abstract

GRAS transcriptional factors have diverse functions in plant growth and development, and are named after the first three transcription factors, namely, GAI (GIBBERELLIC ACID INSENSITIVE), RGA (REPRESSOR OF GAI) and SCR (SCARECROW) identified in this family. Knowledge of the GRAS gene family in maize remains was largely unknown, and their characterization is necessary to understand their importance in the maize life cycle. This study identified 86 GRAS genes in maize, and further characterized with phylogenetics, gene structural analysis, genomic loci, and expression patterns. The 86 GRAS genes were divided into 8 groups (SCL3, HAM, LS, SCR, DELLA, SHR, PAT1 and LISCL) by phylogenetic analysis. Most of the maize GRAS genes contain one exon (80.23%) and closely related members in the phylogenetic tree had similar structure and motif composition. Different motifs especially in the N-terminus might be the sources of their functional divergence. Segmental- and tandem-duplication occurred in this family leading to expansion of maize GRAS genes and the expression patterns of the duplicated genes in the heat map according to the published microarray data were very similar. Quantitative RT-PCR (qRT-PCR) results demonstrated that the expression level of genes in different tissues were different, suggesting their differential roles in plant growth and development. The data set expands our knowledge to understanding the function of GRAS genes in maize, an important crop plant in the world.

MeSH terms

  • Chromosome Mapping
  • Chromosomes, Plant / genetics
  • Conserved Sequence / genetics
  • Gene Expression Profiling
  • Gene Expression Regulation, Plant*
  • Genes, Plant*
  • Multigene Family*
  • Nucleotide Motifs / genetics
  • Phylogeny
  • Real-Time Polymerase Chain Reaction
  • Sequence Alignment
  • Zea mays / genetics*

Grants and funding

This work was supported by the Ministry of Agriculture of China (grant number 2016ZX08009002), the foundation of the Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations (grant number lzujbky-2016-bt05), the National Natural Science Foundation of China (grant number 31301080) and Funds of Shandong "Double Tops" Program.