The Role of N-α-acetyltransferase 10 Protein in DNA Methylation and Genomic Imprinting

Mol Cell. 2017 Oct 5;68(1):89-103.e7. doi: 10.1016/j.molcel.2017.08.025. Epub 2017 Sep 21.

Abstract

Genomic imprinting is an allelic gene expression phenomenon primarily controlled by allele-specific DNA methylation at the imprinting control region (ICR), but the underlying mechanism remains largely unclear. N-α-acetyltransferase 10 protein (Naa10p) catalyzes N-α-acetylation of nascent proteins, and mutation of human Naa10p is linked to severe developmental delays. Here we report that Naa10-null mice display partial embryonic lethality, growth retardation, brain disorders, and maternal effect lethality, phenotypes commonly observed in defective genomic imprinting. Genome-wide analyses further revealed global DNA hypomethylation and enriched dysregulation of imprinted genes in Naa10p-knockout embryos and embryonic stem cells. Mechanistically, Naa10p facilitates binding of DNA methyltransferase 1 (Dnmt1) to DNA substrates, including the ICRs of the imprinted allele during S phase. Moreover, the lethal Ogden syndrome-associated mutation of human Naa10p disrupts its binding to the ICR of H19 and Dnmt1 recruitment. Our study thus links Naa10p mutation-associated Ogden syndrome to defective DNA methylation and genomic imprinting.

Keywords: DNA methylation; Dnmt1; N-α-acetyltransferase; Naa10p; Ogden syndrome; development; developmental delay; genomic imprinting.

MeSH terms

  • Animals
  • DNA (Cytosine-5-)-Methyltransferase 1
  • DNA (Cytosine-5-)-Methyltransferases / genetics*
  • DNA (Cytosine-5-)-Methyltransferases / metabolism
  • DNA / genetics
  • DNA / metabolism
  • DNA Methylation
  • Developmental Disabilities / genetics*
  • Developmental Disabilities / metabolism
  • Developmental Disabilities / pathology
  • Disease Models, Animal
  • Embryo, Mammalian
  • Epigenesis, Genetic*
  • Female
  • Gene Deletion
  • Genes, Lethal
  • Genome-Wide Association Study
  • Genomic Imprinting*
  • Male
  • Mice
  • Mice, Inbred C57BL
  • Mice, Knockout
  • Mouse Embryonic Stem Cells / metabolism
  • Mouse Embryonic Stem Cells / pathology
  • N-Terminal Acetyltransferase A / deficiency
  • N-Terminal Acetyltransferase A / genetics*
  • N-Terminal Acetyltransferase E / deficiency
  • N-Terminal Acetyltransferase E / genetics*
  • Protein Binding
  • RNA, Long Noncoding / genetics*
  • RNA, Long Noncoding / metabolism
  • S Phase / genetics

Substances

  • H19 long non-coding RNA
  • RNA, Long Noncoding
  • DNA
  • DNA (Cytosine-5-)-Methyltransferase 1
  • DNA (Cytosine-5-)-Methyltransferases
  • DNMT1 protein, human
  • Dnmt1 protein, mouse
  • N-Terminal Acetyltransferase A
  • Naa10 protein, mouse
  • N-Terminal Acetyltransferase E