Visualizing tRNA-dependent mistranslation in human cells

RNA Biol. 2018;15(4-5):567-575. doi: 10.1080/15476286.2017.1379645. Epub 2017 Nov 9.

Abstract

High-fidelity translation and a strictly accurate proteome were originally assumed as essential to life and cellular viability. Yet recent studies in bacteria and eukaryotic model organisms suggest that proteome-wide mistranslation can provide selective advantages and is tolerated in the cell at higher levels than previously thought (one error in 6.9 × 10-4 in yeast) with a limited impact on phenotype. Previously, we selected a tRNAPro containing a single mutation that induces mistranslation with alanine at proline codons in yeast. Yeast tolerate the mistranslation by inducing a heat-shock response and through the action of the proteasome. Here we found a homologous human tRNAPro (G3:U70) mutant that is not aminoacylated with proline, but is an efficient alanine acceptor. In live human cells, we visualized mistranslation using a green fluorescent protein reporter that fluoresces in response to mistranslation at proline codons. In agreement with measurements in yeast, quantitation based on the GFP reporter suggested a mistranslation rate of up to 2-5% in HEK 293 cells. Our findings suggest a stress-dependent phenomenon where mistranslation levels increased during nutrient starvation. Human cells did not mount a detectable heat-shock response and tolerated this level of mistranslation without apparent impact on cell viability. Because humans encode ∼600 tRNA genes and the natural population has greater tRNA sequence diversity than previously appreciated, our data also demonstrate a cell-based screen with the potential to elucidate mutations in tRNAs that may contribute to or alleviate disease.

Keywords: Aminoacyl-tRNA synthetase; cell stress; genetic code; tRNA; translation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alanine / genetics
  • Alanine / metabolism*
  • Amino Acyl-tRNA Synthetases / genetics*
  • Amino Acyl-tRNA Synthetases / metabolism
  • Aminoacylation
  • Anticodon / chemistry
  • Anticodon / metabolism
  • Cell Survival / drug effects
  • Codon / chemistry
  • Codon / metabolism
  • Culture Media / pharmacology
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Genes, Reporter
  • Glucose / deficiency
  • Green Fluorescent Proteins / genetics
  • Green Fluorescent Proteins / metabolism
  • HEK293 Cells
  • Humans
  • Mutation*
  • Plasmids / chemistry
  • Plasmids / metabolism
  • Proline / genetics
  • Proline / metabolism*
  • Proteasome Endopeptidase Complex / metabolism
  • Protein Biosynthesis*
  • RNA Processing, Post-Transcriptional*
  • RNA, Transfer, Pro / genetics*
  • RNA, Transfer, Pro / metabolism
  • Transfection

Substances

  • Anticodon
  • Codon
  • Culture Media
  • RNA, Transfer, Pro
  • enhanced green fluorescent protein
  • Green Fluorescent Proteins
  • Proline
  • Proteasome Endopeptidase Complex
  • Amino Acyl-tRNA Synthetases
  • Glucose
  • Alanine

Grants and funding

Canada Research Chairs, Government of Canada | Natural Sciences and Engineering Research Council of Canada (NSERC), Canadian Cancer Society Research Institute (CCSRI), Ontario Research Fund, Government of Canada | Natural Sciences and Engineering Research Council of Canada (NSERC), Canada Foundation for Innovation (CFI)