Identification of major quantitative trait loci for root diameter in synthetic hexaploid wheat under phosphorus-deficient conditions

J Appl Genet. 2017 Nov;58(4):437-447. doi: 10.1007/s13353-017-0406-5. Epub 2017 Sep 8.

Abstract

Synthetic hexaploid wheat (SHW) possesses numerous genes for resistance to stress, including phosphorus (P) deficiency. Root diameter (RDM) plays an important role in P-deficiency tolerance, but information related to SHW is still limited. Thus, the objective of this study was to investigate the genetic architecture of RDM in SHW under P-deficient conditions. To this end, we measured the RDM of 138 F9 recombinant inbred lines derived from an F2 population of a synthetic hexaploid wheat line (SHW-L1) and a common wheat line (Chuanmai32) under two P conditions, P sufficiency (PS) and P deficiency (PD), and mapped quantitative trait loci (QTL) for RDM using an enriched high-density genetic map, containing 120,370 single nucleotide polymorphisms, 733 diversity arrays technology markers, and 119 simple sequence repeats. We identified seven RDM QTL for P-deficiency tolerance that individually explained 11-14.7% of the phenotypic variation. Five putative candidate genes involved in root composition, energy supply, and defense response were predicted. Overall, our results provided essential information for cloning genes related to P-deficiency tolerance in common wheat that might help in breeding P-deficiency-tolerant wheat cultivars.

Keywords: Phosphorus deficiency; Quantitative trait locus; Recombinant inbred lines; Root diameter; Synthetic hexaploid wheat.

MeSH terms

  • Chromosome Mapping / methods
  • Chromosomes, Plant / genetics
  • DNA, Plant / genetics
  • Genome, Plant / genetics
  • Genotype
  • Phenotype
  • Phosphorus / deficiency*
  • Plant Roots / genetics*
  • Polymorphism, Single Nucleotide / genetics
  • Quantitative Trait Loci / genetics*
  • Triticum / genetics*

Substances

  • DNA, Plant
  • Phosphorus