Chromobacterium sphagni sp. nov., an insecticidal bacterium isolated from Sphagnum bogs

Int J Syst Evol Microbiol. 2017 Sep;67(9):3417-3422. doi: 10.1099/ijsem.0.002127. Epub 2017 Aug 22.

Abstract

Sixteen isolates of Gram-reaction-negative, motile, violet-pigmented bacteria were isolated from Sphagnum bogs in West Virginia and Maine, USA. 16S rRNA gene sequences and fatty acid analysis revealed a high degree of relatedness among the isolates, and genome sequencing of two isolates, IIBBL 14B-1T and IIBBL 37-2 (from West Virginia and Maine, respectively), revealed highly similar genomic sequences. The average nucleotide identity (gANI) calculated for these two isolates was found to be in excess of 99 %, but did not exceed 88 % when comparing either isolate with genomic sequences of Chromobacterium violaceum ATCC 12472T, C. haemolyticum DSM 19808T, C. piscinae ND17, C. subtsugae PRAA4-1T, C. vaccinii MWU205T or C. amazonense CBMAI 310T. Collectively, gANI and 16S rRNA gene sequence comparisons suggested that isolates IIBBL 14B-1T and IIBBL 37-2 were most closely related to C. subtsugae, but represented a distinct species. We propose the name Chromobacterium sphagni sp. nov. for this taxon; the type strain is IIBBL 14B-1T (=NRRL B-67130T=JCM 31882T).

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • Chromobacterium / classification*
  • Chromobacterium / genetics
  • Chromobacterium / isolation & purification
  • DNA, Bacterial / genetics
  • Maine
  • Phylogeny*
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA
  • Sphagnopsida / microbiology*
  • West Virginia
  • Wetlands*

Substances

  • DNA, Bacterial
  • RNA, Ribosomal, 16S