We report that vertical graphene coating can greatly improve the electrochemical performance and the interfacial stability of silicon nanocone (SNC) anodes for lithium-ion batteries. The coating patterning technology is innovatively employed for side-by-side demonstration of the exclusive influences of graphene coating on the solid-electrolyte interphase (SEI) formation and the structural stability of the SNC electrode. The silicon nanocone-graphene (SNC-G) electrode achieves a longer cycle life (1715 cycles), higher Coulombic efficiency (average 98.2%), better rate capability, and lower electrode polarization than the SNC electrode. The patterning of the graphene coating provides a much direct and convincing morphological comparison between the SNC-G structure and the SNC structure, showing clearly that the SNC-G area maintains a thin SEI layer and stable nanostructure after cycling, while the SNC area is gradually damaged and covered with a thick SEI layer after 100 cycles. Our results clearly indicate the improved electrochemical performance and interfacial stability attributed to the vertical graphene coating, and the as-proposed patterning technology also paves a new way for comparative research on coating materials for lithium-ion batteries.