Prognostic DNA methylation markers for renal cell carcinoma: a systematic review

Epigenomics. 2017 Sep;9(9):1243-1257. doi: 10.2217/epi-2017-0040. Epub 2017 Aug 14.

Abstract

Aim: Despite numerous published prognostic methylation markers for renal cell carcinoma (RCC), none of these have yet changed patient management. Our aim is to systematically review and evaluate the literature on prognostic DNA methylation markers for RCC.

Materials & methods: We conducted an exhaustive search of PubMed, EMBASE and MEDLINE up to April 2017 and identified 49 publications. Studies were reviewed according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement, assessed for their reporting quality using the Reporting Recommendations for Tumor Marker Prognostic Studies (REMARK) criteria, and were graded to determine the level of evidence (LOE) for each biomarker.

Results: We identified promoter methylation of BNC1, SCUBE3, GATA5, SFRP1, GREM1, RASSF1A, PCDH8, LAD1 and NEFH as promising prognostic markers. Extensive methodological heterogeneity across the included studies was observed, which hampers comparability and reproducibility of results, providing a possible explanation why these biomarkers do not reach the clinic.

Conclusion: Potential prognostic methylation markers for RCC have been identified, but they require further validation in prospective studies to determine their true clinical value.

Keywords: DNA methylation; biomarkers; kidney cancer; prognosis; promoter CpG island methylation; renal cell carcinoma; survival.

Publication types

  • Meta-Analysis
  • Review
  • Systematic Review

MeSH terms

  • Biomarkers, Tumor / genetics*
  • Cadherins / genetics
  • Calcium-Binding Proteins / genetics
  • Carcinoma, Renal Cell / genetics*
  • Carcinoma, Renal Cell / pathology
  • DNA Methylation*
  • DNA-Binding Proteins / genetics
  • GATA5 Transcription Factor / genetics
  • Humans
  • Intercellular Signaling Peptides and Proteins / genetics
  • Kidney Neoplasms / genetics*
  • Kidney Neoplasms / pathology
  • Membrane Proteins / genetics
  • Neurofilament Proteins / genetics
  • Promoter Regions, Genetic
  • Protocadherins
  • Transcription Factors / genetics
  • Tumor Suppressor Proteins / genetics

Substances

  • Biomarkers, Tumor
  • Cadherins
  • Calcium-Binding Proteins
  • DNA-Binding Proteins
  • GATA5 Transcription Factor
  • GATA5 protein, human
  • GREM1 protein, human
  • Intercellular Signaling Peptides and Proteins
  • Membrane Proteins
  • Neurofilament Proteins
  • PCDH8 protein, human
  • Protocadherins
  • RASSF1 protein, human
  • SCUBE3 protein, human
  • SFRP1 protein, human
  • Transcription Factors
  • Tumor Suppressor Proteins
  • neurofilament protein H
  • BNC1 protein, human