SEC-SAXS and HDX-MS: A powerful combination. The case of the calcium-binding domain of a bacterial toxin

Biotechnol Appl Biochem. 2018 Jan;65(1):62-68. doi: 10.1002/bab.1577. Epub 2017 Oct 2.

Abstract

Small-angle X-ray scattering (SAXS) is a relatively simple experimental technique that provides information on the global conformation of macromolecules in solution, be they fully structured, partially, or extensively unfolded. Size exclusion chromatography in line with a SAXS measuring cell considerably improves the monodispersity and ideality of solutions, the two main requirements of a "good" SAXS sample. Hydrogen/deuterium exchange monitored by mass spectrometry (HDX-MS) offers a wealth of information regarding the solvent accessibility at the local (peptide) level. It constitutes a sensitive probe of local flexibility and, more generally, of structural dynamics. The combination of both approaches presented here is very powerful, as illustrated by the case of RD, a calcium-binding protein that is part of a bacterial virulence factor.

Keywords: RTX motif; calcium; hydrogen/deuterium exchange mass spectrometry; size-exclusion chromatography; small-angle X-ray scattering.

Publication types

  • Review

MeSH terms

  • Adenylate Cyclase Toxin / chemistry*
  • Binding Sites
  • Bordetella pertussis / chemistry*
  • Calcium / chemistry*
  • Deuterium Exchange Measurement
  • Mass Spectrometry
  • Models, Molecular
  • Quantum Theory
  • Scattering, Small Angle
  • X-Ray Diffraction

Substances

  • Adenylate Cyclase Toxin
  • Calcium