Synthesis, structure, and biological evaluation of a platinum-carbazole conjugate

Chem Biol Drug Des. 2018 Jan;91(1):116-125. doi: 10.1111/cbdd.13062. Epub 2017 Jul 29.

Abstract

Cisplatin resistance is caused, in part, by the efficient removal of the helix-distorting cisplatin 1,2-intrastrand cross-links by nucleotide excision repair (NER) machinery. To make a platinum-DNA adduct that causes less helical distortion than the cisplatin 1,2-intrastrand adduct, we designed and synthesized a monofunctional platinum-carbazole conjugate (carbazoplatin). The 2.5 Å crystal structure of carbazoplatin-DNA adduct revealed both the monoplatination of the N7 of a guanine (G) base and the intercalation into two G:C base pairs, while causing a minor distortion of the DNA helix. A 50-mer dsDNA containing a single carbazoplatin lesion was poorly processed by UvrABC endonuclease, the prokaryotic NER machinery that detects helical distortion and performs dual incision around the lesion. Our cell viability assay indicated that the cytotoxic pathways of carbazoplatin might be different from those of cisplatin; carbazoplatin was 5-8 times more cytotoxic than cisplatin against PANC-1 and MDA-MB-231 cancer cell lines.

Keywords: DNA damage; X-ray crystallography; cancer therapy; cisplatin; nucleotide excision repair.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Antineoplastic Agents / chemical synthesis*
  • Antineoplastic Agents / chemistry
  • Antineoplastic Agents / pharmacology
  • Binding Sites
  • Carbazoles / chemistry*
  • Cell Line, Tumor
  • Cell Survival / drug effects
  • Cisplatin / pharmacology
  • Crystallography, X-Ray
  • DNA / chemistry
  • DNA / metabolism
  • DNA Adducts / chemistry
  • DNA Damage / drug effects
  • DNA Polymerase beta / chemistry
  • DNA Polymerase beta / metabolism
  • Drug Design
  • Endodeoxyribonucleases / metabolism
  • Escherichia coli Proteins / metabolism
  • Humans
  • Molecular Conformation
  • Molecular Dynamics Simulation
  • Nucleic Acid Conformation
  • Platinum / chemistry*

Substances

  • Antineoplastic Agents
  • Carbazoles
  • DNA Adducts
  • Escherichia coli Proteins
  • Platinum
  • DNA
  • DNA Polymerase beta
  • Endodeoxyribonucleases
  • endodeoxyribonuclease uvrABC
  • Cisplatin