Sensing NADH conformation using phasor analysis on fluorescence spectra

Spectrochim Acta A Mol Biomol Spectrosc. 2017 Nov 5:186:105-111. doi: 10.1016/j.saa.2017.06.013. Epub 2017 Jun 8.

Abstract

Phasor analysis on fluorescence signals is a sensitive approach for analyzing multicomponent systems. Initially developed for time-resolved measurements, a spectral version has been used for the rapid identification of regions during the spectral imaging of biological systems. Here we show that quantitative information regarding conformation can be obtained from phasor analysis of fluorescence spectrum shape. Methanol denaturation of NADH and NADH binding to various dehydrogenase proteins are used as model reactions. Thermodynamic constants are calculated and compared with previous studies based on more direct measures of conformation. Next, the quantitative monitoring of UV-excited autofluorescence spectrum shape during chemically-induced metabolic transitions is presented and discussed in terms of NADH-utilizing pathways. Results show how phasor analysis is useful in assessing two-state behavior, and in interpreting autofluorescence as emission from an ensemble of cellular NADH forms.

Keywords: Autofluorescence; Fluorescence; Molecular conformation; Protein binding; Solvent denaturation; Spectral phasor analysis.

MeSH terms

  • Animals
  • Methanol
  • Molecular Conformation
  • NAD* / analysis
  • NAD* / chemistry
  • NAD* / metabolism
  • Oxidoreductases / chemistry
  • Oxidoreductases / metabolism
  • Protein Binding
  • Protein Denaturation
  • Rabbits
  • Spectrometry, Fluorescence / methods*
  • Swine
  • Thermodynamics

Substances

  • NAD
  • Oxidoreductases
  • Methanol