Constraints, Drivers, and Implications of Influenza A Virus Reassortment

Annu Rev Virol. 2017 Sep 29;4(1):105-121. doi: 10.1146/annurev-virology-101416-041726. Epub 2017 May 26.

Abstract

Influenza A viruses are constantly changing. This change accounts for seasonal epidemics, infrequent pandemics, and zoonotic outbreaks. A major mechanism underlying the genetic diversification of influenza A virus is reassortment of intact gene segments between coinfecting viruses. This exchange is possible because of the segmented nature of the viral genome. Here, I first consider the constraints and drivers acting on influenza A virus reassortment, including the likelihood of coinfection at the host and cellular levels, mixing and assembly of heterologous gene segments within coinfected cells, and the fitness associated with reassortant genotypes. I then discuss the implications of reassortment for influenza A virus evolution, including its classically recognized role in the emergence of genetically "shifted" pandemic strains as well as its potential role as a catalyst of genetic drift.

Keywords: drift; evolution; genetic diversity; influenza; reassortment; shift.

Publication types

  • Review
  • Research Support, N.I.H., Extramural

MeSH terms

  • Animals
  • Coinfection / virology
  • Disease Outbreaks
  • Evolution, Molecular*
  • Genetic Drift
  • Genetic Fitness
  • Genetic Variation*
  • Genome, Viral
  • Genotype
  • Host-Pathogen Interactions / genetics*
  • Humans
  • Influenza A Virus, H1N1 Subtype / genetics
  • Influenza A Virus, H3N2 Subtype / genetics
  • Influenza A virus / genetics*
  • Influenza, Human / virology
  • Orthomyxoviridae Infections / virology
  • Pandemics
  • Reassortant Viruses*