CRENAME, A Molecular Microbiology Method Enabling Multiparametric Assessment of Potable/Drinking Water

Methods Mol Biol. 2017:1620:141-151. doi: 10.1007/978-1-4939-7060-5_9.

Abstract

The microbial assessment of potable/drinking water is done to ensure that the resource is free of fecal contamination indicators or waterborne pathogens. Culture-based methods for verifying the microbial safety are limited in the sense that a standard volume of water is generally tested for only one indicator (family) or pathogen.In this work, we describe a membrane filtration-based molecular microbiology method, CRENAME (Concentration Recovery Extraction of Nucleic Acids and Molecular Enrichment), exploiting molecular enrichment by whole genome amplification (WGA) to yield, in less than 4 h, a nucleic acid preparation which can be repetitively tested by real-time PCR for example, to provide multiparametric presence/absence tests (1 colony forming unit or microbial particle per standard volume of 100-1000 mL) for bacterial or protozoan parasite cells or particles susceptible to contaminate potable/drinking water.

Keywords: CRENAME; Drinking water analysis; Fecal contamination indicators; Membrane filtration; Microbial assessment; Molecular microbiology; Multiparametric detection; Waterborne pathogens; Whole genome amplification.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteria / genetics
  • Bacteria / isolation & purification*
  • Bacteria / pathogenicity
  • Drinking Water / microbiology*
  • Genome, Bacterial
  • Real-Time Polymerase Chain Reaction / methods*
  • Water Microbiology

Substances

  • Drinking Water