Dpb11 may function with RPA and DNA to initiate DNA replication

PLoS One. 2017 May 3;12(5):e0177147. doi: 10.1371/journal.pone.0177147. eCollection 2017.

Abstract

Dpb11 is required for the initiation of DNA replication in budding yeast. We found that Dpb11 binds tightly to single-stranded DNA (ssDNA) or branched DNA structures, while its human homolog, TopBP1, binds tightly to branched-DNA structures. We also found that Dpb11 binds stably to CDK-phosphorylated RPA, the eukaryotic ssDNA binding protein, in the presence of branched DNA. A Dpb11 mutant specifically defective for DNA binding did not exhibit tight binding to RPA in the presence of DNA, suggesting that Dpb11-interaction with DNA may promote the recruitment of RPA to melted DNA. We then characterized a mutant of Dpb11 that is specifically defective in DNA binding in budding yeast cells. Expression of dpb11-m1,2,3,5,ΔC results in a substantial decrease in RPA recruitment to origins, suggesting that Dpb11 interaction with DNA may be required for RPA recruitment to origins. Expression of dpb11-m1,2,3,5,ΔC also results in diminished GINS interaction with Mcm2-7 during S phase, while Cdc45 interaction with Mcm2-7 is like wild-type. The reduced GINS interaction with Mcm2-7 may be an indirect consequence of diminished origin melting. We propose that the tight interaction between Dpb11, CDK-phosphorylated RPA, and branched-DNA may be required for the essential function of stabilizing melted origin DNA in vivo. We also propose an alternative model, wherein Dpb11-DNA interaction is required for some other function in DNA replication initiation, such as helicase activation.

MeSH terms

  • Cell Cycle Proteins / physiology*
  • Chromatin Immunoprecipitation
  • DNA Replication / physiology*
  • DNA, Fungal / physiology*
  • Electrophoretic Mobility Shift Assay
  • Flow Cytometry
  • Immunoprecipitation
  • Replication Protein A / physiology*
  • Saccharomyces cerevisiae / metabolism
  • Saccharomyces cerevisiae Proteins / physiology*

Substances

  • Cell Cycle Proteins
  • DNA, Fungal
  • DPB11 protein, S cerevisiae
  • RFA1 protein, S cerevisiae
  • Replication Protein A
  • Saccharomyces cerevisiae Proteins