Cell geometry dictates TNFα-induced genome response

Proc Natl Acad Sci U S A. 2017 May 16;114(20):E3882-E3891. doi: 10.1073/pnas.1618007114. Epub 2017 May 1.

Abstract

Cells in physiology integrate local soluble and mechanical signals to regulate genomic programs. Whereas the individual roles of these signals are well studied, the cellular responses to the combined chemical and physical signals are less explored. Here, we investigated the cross-talk between cellular geometry and TNFα signaling. We stabilized NIH 3T3 fibroblasts into rectangular anisotropic or circular isotropic geometries and stimulated them with TNFα and analyzed nuclear translocation of transcription regulators -NFκB (p65) and MKL and downstream gene-expression patterns. We found that TNFα induces geometry-dependent actin depolymerization, which enhances IκB degradation, p65 nuclear translocation, nuclear exit of MKL, and sequestration of p65 at the RNA-polymerase-II foci. Further, global transcription profile of cells under matrix-TNFα interplay reveals a geometry-dependent gene-expression pattern. At a functional level, we find cell geometry affects TNFα-induced cell proliferation. Our results provide compelling evidence that fibroblasts, depending on their geometries, elicit distinct cellular responses for the same cytokine.

Keywords: NFκB; TNFα; cell geometry; gene expression.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Nucleus / metabolism
  • Cell Shape / genetics
  • Cell Size
  • Fibroblasts / metabolism
  • Gene Expression / drug effects
  • Gene Expression / physiology*
  • Humans
  • I-kappa B Proteins / metabolism
  • Mice
  • NIH 3T3 Cells / metabolism
  • Signal Transduction / drug effects
  • Trans-Activators / metabolism
  • Transcription Factor RelA / metabolism
  • Tumor Necrosis Factor-alpha / genetics*
  • Tumor Necrosis Factor-alpha / metabolism*

Substances

  • I-kappa B Proteins
  • MRTFA protein, human
  • RELA protein, human
  • Trans-Activators
  • Transcription Factor RelA
  • Tumor Necrosis Factor-alpha