Avoidance of reporter assay distortions from fused dual reporters

RNA. 2017 Aug;23(8):1285-1289. doi: 10.1261/rna.061051.117. Epub 2017 Apr 25.

Abstract

Positioning test sequences between fused reporters permits monitoring of both translation levels and framing, before and after the test sequence. Many studies, including those on recoding such as productive ribosomal frameshifting and stop codon readthrough, use distinguishable luciferases or fluorescent proteins as reporters. Occasional distortions, due to test sequence product interference with the individual reporter activities or stabilities, are here shown to be avoidable by the introduction of tandem StopGo sequences (2A) flanking the test sequence. Using this new vector system (pSGDluc), we provide evidence for the use of a 3' stem-loop stimulator for ACP2 readthrough, but failed to detect the reported VEGFA readthrough.

Keywords: StopGo; dual-luciferase; frameshifting; readthrough; recoding.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, N.I.H., Extramural

MeSH terms

  • Acid Phosphatase / genetics
  • Acid Phosphatase / metabolism
  • Amino Acid Sequence
  • Base Sequence
  • Codon, Terminator / genetics*
  • Frameshifting, Ribosomal*
  • Genes, Reporter*
  • Genetic Vectors
  • HEK293 Cells
  • Humans
  • Luciferases / genetics
  • Luciferases / metabolism*
  • Luminescent Proteins / analysis*
  • Vascular Endothelial Growth Factor A / genetics
  • Vascular Endothelial Growth Factor A / metabolism

Substances

  • Codon, Terminator
  • Luminescent Proteins
  • VEGFA protein, human
  • Vascular Endothelial Growth Factor A
  • Luciferases
  • ACP2 protein, human
  • Acid Phosphatase