Ultrafast Dynamics of a Triazene: Excited-State Pathways and the Impact of Binding to the Minor Groove of DNA and Further Biomolecular Systems

J Phys Chem Lett. 2017 May 4;8(9):1986-1992. doi: 10.1021/acs.jpclett.7b00472. Epub 2017 Apr 20.

Abstract

Many synthetic DNA minor groove binders exhibit a strong increase in fluorescence when bound to DNA. The pharmaceutical-relevant berenil (diminazene aceturate) is an exception with an extremely low fluorescence quantum yield (on the order of 10-4). We investigate the ultrafast excited-state dynamics of this triazene by femtosecond time-resolved fluorescence experiments in water, ethylene glycol, and buffer and bound to the enzyme β-trypsin, the minor groove of AT-rich DNA, and G-quadruplex DNA. Ab initio calculations provide additional mechanistic insight. The complementing studies unveil that the excited-state motion initiated by ππ* excitation occurs in two phases: a subpicosecond phase associated with the lengthening of the central N═N double bond, followed by a bicycle-pedal-type motion of the triazene bridge, which is almost volume-conserving and can proceed efficiently within only a few picoseconds even under spatially confined conditions. Our results elucidate the excited-state relaxation mechanism of aromatic triazenes and explain the modest sensitivity of the fluorescence quantum yield of berenil even when it is bound to various biomolecules.

MeSH terms

  • Binding Sites
  • DNA / chemistry*
  • Diminazene / analogs & derivatives*
  • Diminazene / chemistry
  • G-Quadruplexes
  • Molecular Structure
  • Spectrometry, Fluorescence*
  • Triazenes
  • Trypsin / metabolism*

Substances

  • Triazenes
  • DNA
  • Trypsin
  • diminazene aceturate
  • Diminazene