DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies

Genome Biol Evol. 2017 May 1;9(5):1312-1319. doi: 10.1093/gbe/evx069.

Wandrille Duchemin^{1

2}, Yoann Anselmetti^{2

3}, Murray Patterson^{2

4}, Yann Ponty^{5

6}, Sèverine Bérard^{3

7}, Cedric Chauve⁸, Celine Scornavacca³, Vincent Daubin², Eric Tannier^{1

2}

¹ Inria Grenoble Rhône-Alpes, Montbonnot, France.
² Université de Lyon, Université Lyon 1, CNRS, Laboratoire de Biométrie et Biologie Évolutive UMR5558, Villeurbanne, France.
³ Institut des Sciences de l'Évolution, Université de Montpellier, CNRS, IRD, EPHE, Montpellier, France.
⁴ Experimental Algorithmics Lab (AlgoLab), Dipartimento di Informatica, Sistemistica e Comunicazione (DISCo), Università degli Studi di Milano-Bicocca, Viale Sarca, Milano, Italy.
⁵ CNRS, Ecole Polytechnique, LIX UMR7161, Palaiseau, France.
⁶ Inria Saclay, EP AMIB, Palaiseau, France.
⁷ LIRMM, Université de Montpellier, CNRS, Montpellier, France.
⁸ Department of Mathematics, Simon Fraser University, Burnaby, British Columbia, Canada.

Abstract

http://pbil.univ-lyon1.fr/software/DeCoSTAR (Last accessed April 24, 2017).

Keywords: evolution; gene fusion/fission; gene order; protein domain; rearrangements; reconciliation; software.