A duplex polymerase chain reaction-restriction fragment length polymorphism for rapid screening of methylenetetrahydrofolate reductase gene variants: Genotyping in acute leukemia

J Clin Lab Anal. 2018 Jan;32(1):e22198. doi: 10.1002/jcla.22198. Epub 2017 Apr 4.

Abstract

Background: Methylenetetrahydrofolate reductase (MTHFR; NM_005957.4) is the key enzyme for folate metabolism which plays in DNA biosynthesis and the epigenetic process of DNA methylation. MTHFR gene polymorphisms, the c. 677C>T and c. 1298A>C have been implicated as risk factors for several types of cancers as the acute leukemia.

Aim: We have optimized a duplex polymerase chain reaction-restriction fragment length polymorphism assay (PCR-RFLP) for the simultaneous detection of both variants in acute leukemia patients, from Tunisia.

Methods: Genomic DNA was extracted from EDTA-anticoagulant blood samples from a total of 50 patients suffering from acute leukemia (AL). After DNA extraction, the polymerase chain reaction using specific primers, designed using Primer 3 Software. Restriction Fragment Length Polymorphism (RFLP) was performed in two separate tubes followed by agarose gel electrophoresis.

Conclusion: This new method has proved to be a rapid, simple, and reliable method that should facilitate high throughput genotyping of MTHFR polymorphisms in acute leukemia.

Keywords: methylenetetrahydrofolate reductase; polymerase chain reaction; polymorphisms; restriction fragment length polymorphism.

MeSH terms

  • Genotyping Techniques / methods*
  • Humans
  • Leukemia / genetics*
  • Methylenetetrahydrofolate Reductase (NADPH2) / genetics*
  • Polymerase Chain Reaction / methods*
  • Polymorphism, Restriction Fragment Length / genetics*

Substances

  • Methylenetetrahydrofolate Reductase (NADPH2)