X-ray diffraction analysis and in vitro characterization of the UAM2 protein from Oryza sativa

Acta Crystallogr F Struct Biol Commun. 2017 Apr 1;73(Pt 4):241-245. doi: 10.1107/S2053230X17004587. Epub 2017 Mar 29.

Abstract

The role of seemingly non-enzymatic proteins in complexes interconverting UDP-arabinopyranose and UDP-arabinofuranose (UDP-arabinosemutases; UAMs) in the plant cytosol remains unknown. To shed light on their function, crystallographic and functional studies of the seemingly non-enzymatic UAM2 protein from Oryza sativa (OsUAM2) were undertaken. Here, X-ray diffraction data are reported, as well as analysis of the oligomeric state in the crystal and in solution. OsUAM2 crystallizes readily but forms highly radiation-sensitive crystals with limited diffraction power, requiring careful low-dose vector data acquisition. Using size-exclusion chromatography, it is shown that the protein is monomeric in solution. Finally, limited proteolysis was employed to demonstrate DTT-enhanced proteolytic digestion, indicating the existence of at least one intramolecular disulfide bridge or, alternatively, a requirement for a structural metal ion.

Keywords: UDP-arabinopyranose mutase; limited proteolysis; reversibly glycosylated polypeptide; vector data collection.

MeSH terms

  • Amino Acid Sequence
  • Cloning, Molecular
  • Crystallization
  • Crystallography, X-Ray
  • Dithiothreitol / chemistry
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Genetic Vectors / chemistry
  • Genetic Vectors / metabolism
  • Intramolecular Transferases / chemistry*
  • Intramolecular Transferases / genetics
  • Intramolecular Transferases / metabolism
  • Oryza / chemistry*
  • Oryza / enzymology
  • Plant Proteins / chemistry*
  • Plant Proteins / genetics
  • Plant Proteins / metabolism
  • Proteolysis
  • Recombinant Fusion Proteins / chemistry
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Subtilisin / chemistry
  • Uridine Diphosphate Sugars / chemistry*
  • Uridine Diphosphate Sugars / metabolism
  • X-Ray Diffraction

Substances

  • Plant Proteins
  • Recombinant Fusion Proteins
  • Uridine Diphosphate Sugars
  • uridine diphosphate arabinose
  • Subtilisin
  • Intramolecular Transferases
  • Dithiothreitol