Lignin-degrading peroxidases in white-rot fungus Trametes hirsuta 072. Absolute expression quantification of full multigene family

PLoS One. 2017 Mar 16;12(3):e0173813. doi: 10.1371/journal.pone.0173813. eCollection 2017.

Abstract

Ligninolytic heme peroxidases comprise an extensive family of enzymes, which production is characteristic for white-rot Basidiomycota. The majority of fungal heme peroxidases are encoded by multigene families that differentially express closely related proteins. Currently, there were very few attempts to characterize the complete multigene family of heme peroxidases in a single fungus. Here we are focusing on identification and characterization of peroxidase genes, which are transcribed and secreted by basidiomycete Trametes hirsuta 072, an efficient lignin degrader. The T. hirsuta genome contains 18 ligninolytic peroxidase genes encoding 9 putative lignin peroxidases (LiP), 7 putative short manganese peroxidases (MnP) and 2 putative versatile peroxidases (VP). Using ddPCR method we have quantified the absolute expression of the 18 peroxidase genes under different culture conditions and on different growth stages of basidiomycete. It was shown that only two genes (one MnP and one VP) were prevalently expressed as well as secreted into cultural broth under all conditions investigated. However their transcriptome and protein profiles differed in time depending on the effector used. The expression of other peroxidase genes revealed a significant variability, so one can propose the specific roles of these enzymes in fungal development and lifestyle.

MeSH terms

  • Genes, Fungal*
  • Lignin / metabolism*
  • Multigene Family*
  • Peroxidases / classification
  • Peroxidases / metabolism*
  • Phylogeny
  • Trametes / enzymology*
  • Trametes / genetics
  • Transcription, Genetic

Substances

  • Lignin
  • Peroxidases

Grants and funding

This work was supported by the Russian Science Foundation, project no. 14-14-00620. The funder had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.