Endophytic root bacteria associated with the natural vegetation growing at the hydrocarbon-contaminated Bitumount Provincial Historic site

Can J Microbiol. 2017 Jun;63(6):502-515. doi: 10.1139/cjm-2017-0039. Epub 2017 Feb 24.

Abstract

The Bitumount Provincial Historic site is the location of 2 of the world's first oil-extracting and -refining operations. Despite hydrocarbon levels ranging from 330 to 24 700 mg·(kg soil)-1, plants have been able to recolonize the site through means of natural revegetation. This study was designed to achieve a better understanding of the plant-root-associated bacterial partnerships occurring within naturally revegetated hydrocarbon-contaminated soils. Root endophytic bacterial communities were characterized from representative plant species throughout the site by both high-throughput sequencing and culturing techniques. Population abundance of rhizosphere and root endosphere bacteria was significantly influenced (p < 0.05) by plant species and sampling location. In general, members of the Actinomycetales, Rhizobiales, Pseudomonadales, Burkholderiales, and Sphingomonadales orders were the most commonly identified orders. Community structure of root-associated bacteria was influenced by both plant species and sampling location. Quantitative real-time polymerase chain reaction was used to determine the potential functional diversity of the root endophytic bacteria. The gene copy numbers of 16S rRNA and 2 hydrocarbon-degrading genes (CYP153 and alkB) were significantly affected (p < 0.05) by the interaction of plant species and sampling location. Our findings suggest that some of the bacterial communities detected are known to exhibit plant growth promotion characteristics.

Keywords: bactéries endophytes racinaires; communautés bactériennes; endophytic root bacteria; hydrocarbures pétroliers; microbial community; petroleum hydrocarbons; reclamation–remediation; réhabilitation–restauration.

MeSH terms

  • Bacteria / genetics
  • Biodegradation, Environmental
  • Hydrocarbons*
  • Plant Development
  • Plant Roots / microbiology*
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Rhizosphere
  • Soil / chemistry
  • Soil Microbiology*
  • Soil Pollutants* / analysis

Substances

  • Hydrocarbons
  • RNA, Bacterial
  • RNA, Ribosomal, 16S
  • Soil
  • Soil Pollutants