Effect of methyl groups on conformational properties of small ionized comb-like polyelectrolytes at the atomic level

J Mol Model. 2017 Mar;23(3):76. doi: 10.1007/s00894-017-3254-7. Epub 2017 Feb 15.

Abstract

Comb-like polycarboxylate ether (PCE) molecules with different content of methyl groups substituted on backbone and different location of methyl groups substituted on the side chains, respectively, were designed and were studied in explicit salt solutions by all-atom molecular dynamics simulations. Methyl groups substituted on the backbone of PCE have a great effect on the conformation of PCE. Stiffness of charged backbone was not only affected by the rotational freedom but also the electrostatic repulsion between the charged COO- groups. The interaction of counterions (Na+) with COO- groups for PCE3 (with part of AA substituted by MAA on the backbone) was stronger and the screen effect was great, which decided the smaller size of PCE3. The interaction between water and COO- groups was strong regardless of the content of AA substituted by MAA on the backbone. The effect of methyl groups substituted on the different location of side chains on the conformation of PCE was less than that of methyl groups substituted on the backbone. The equilibrium sizes of the four PCE molecules with methyl groups substituted on the side chains were similar. Graphical Abstract Effect of methyl groups on conformational properties of small ionized comb-like polyelectrolytes at the atomic level.

Keywords: Conformation; Flexibility; Methyl groups; Molecular dynamics simulations; Polycarboxylate ether; Screen effect.