Bacterial community structure and prevalence of Pusillimonas-like bacteria in aged landfill leachate

Environ Sci Pollut Res Int. 2017 Mar;24(7):6757-6769. doi: 10.1007/s11356-017-8416-8. Epub 2017 Jan 13.

Abstract

Although several works have been performed from an engineering point of view, a limited number of studies have focused on microbial communities involved in the humification of aged landfill leachates. In this work, cultivation techniques, next-generation sequencing, and phospholipid fatty acid analysis were adopted to decrypt the diversity and the ecophysiological properties of the dominant microbiota in aged landfill leachate. Based on Illumina sequencing, Betaproteobacteria, Bacteroidetes, Actinobacteria, and Alphaproteobacteria dominated the aged landfill leachate. The main taxa identified at genus level were Pusillimonas-like bacteria and Leucobacter (41.46% of total reads), with all of them being also isolated through cultivation. The presence of Pusillimonas-like bacteria was also verified by the detection of cyclo17:0 and iso-19:0 fatty acids in aged landfill leachate microbiota. Despite that almost all bacterial isolates exhibited extracellular lipolytic ability, no particular specificity was observed in the type of substrate utilized. The prevalence of effective degraders, such as Pusillimonas-like bacteria, makes the aged landfill leachate an ideal source for isolation of novel microorganisms with potential in situ bioremediation uses.

Keywords: Ecophysiological profile; Fatty acid biomarker; Humification; Illumina sequencing; Leucobacter; Pusillimonas; Specialized degrading consortia.

MeSH terms

  • Actinobacteria / chemistry
  • Actinobacteria / genetics
  • Actinobacteria / isolation & purification
  • Alphaproteobacteria / chemistry
  • Alphaproteobacteria / genetics
  • Alphaproteobacteria / isolation & purification
  • Bacteroidetes / chemistry
  • Bacteroidetes / genetics
  • Bacteroidetes / isolation & purification
  • Betaproteobacteria / chemistry
  • Betaproteobacteria / genetics
  • Betaproteobacteria / isolation & purification
  • Biodegradation, Environmental
  • Biological Oxygen Demand Analysis
  • Microbiota
  • Phospholipids / chemistry
  • Phylogeny
  • Waste Disposal Facilities
  • Wastewater / analysis
  • Wastewater / microbiology*
  • Water Microbiology*
  • Water Pollutants, Chemical / analysis*
  • Water Pollutants, Chemical / chemistry

Substances

  • Phospholipids
  • Waste Water
  • Water Pollutants, Chemical