Fine mapping and candidate gene analysis of Brtri1, a gene controlling trichome development in Chinese cabbage (Brassica rapa L. ssp pekinensis)

Genet Mol Res. 2016 Dec 2;15(4). doi: 10.4238/gmr15048924.

Abstract

Trichomes are derived from the epidermis and constitute an ideal system for studying cell division in plants. Here, a Chinese cabbage doubled haploid (DH) line (FT) without trichomes was crossed with another DH line (PurDH-1) with trichomes to develop an F2 population for fine mapping of trichome control genes. Genetic analysis showed that the trichome phenotype was controlled by a single dominant gene, Brtri1. Using 1226 glabrous individuals in the F2 segregation population, Brtri1 was localized to a 16.84 kb region between markers Pur6-31 and Pur6-39 on chromosome A06. One of the four complete open reading frames within the mapping region, Bra025311, encodes a MYB transcription factor and is highly homologous to the trichome regulatory gene GL1 in Arabidopsis thaliana. It was thus regarded as a candidate gene for Brtri1. Comparative sequencing showed a 5-bp deletion in the third exon of Bra025311 in FT, resulting in a frame-shift mutation. No expression of Bra025311 was detected in FT. A co-dominant indel marker close to this mutation site was developed for marker-assisted selection in Chinese cabbage breeding.

MeSH terms

  • Brassica rapa / genetics*
  • Brassica rapa / growth & development
  • Chromosome Mapping / methods*
  • Crosses, Genetic
  • DNA, Plant / analysis
  • Frameshift Mutation
  • Genetic Markers
  • Haploidy
  • Phenotype
  • Sequence Analysis, DNA
  • Transcription Factors / genetics*
  • Trichomes / genetics
  • Trichomes / growth & development*

Substances

  • DNA, Plant
  • Genetic Markers
  • Transcription Factors