Functional dissection of the N-terminal sequence of Clostridium sp. G0005 glucoamylase: identification of components critical for folding the catalytic domain and for constructing the active site structure

Appl Microbiol Biotechnol. 2017 Mar;101(6):2415-2425. doi: 10.1007/s00253-016-8024-4. Epub 2016 Dec 9.

Abstract

Clostridium sp. G0005 glucoamylase (CGA) is composed of a β-sandwich domain (BD), a linker, and a catalytic domain (CD). In the present study, CGA was expressed in Escherichia coli as inclusion bodies when the N-terminal region (39 amino acid residues) of the BD was truncated. To further elucidate the role of the N-terminal region of the BD, we constructed N-terminally truncated proteins (Δ19, Δ24, Δ29, and Δ34) and assessed their solubility and activity. Although all evaluated proteins were soluble, their hydrolytic activities toward maltotriose as a substrate varied: Δ19 and Δ24 were almost as active as CGA, but the activity of Δ29 was substantially lower, and Δ34 exhibited little hydrolytic activity. Subsequent truncation analysis of the N-terminal region sequence between residues 25 and 28 revealed that truncation of less than 26 residues did not affect CGA activity, whereas truncation of 26 or more residues resulted in a substantial loss of activity. Based on further site-directed mutagenesis and N-terminal sequence analysis, we concluded that the 26XaaXaaTrp28 sequence of CGA is important in exhibiting CGA activity. These results suggest that the N-terminal region of the BD in bacterial GAs may function not only in folding the protein into the correct structure but also in constructing a competent active site for catalyzing the hydrolytic reaction.

Keywords: GH15 family enzymes; Glucoamylase; Inclusion body; Internal chaperone-like function; N-terminal region loop.

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Catalytic Domain
  • Cloning, Molecular
  • Clostridium / enzymology*
  • Clostridium / genetics
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Glucan 1,4-alpha-Glucosidase / chemistry*
  • Glucan 1,4-alpha-Glucosidase / genetics
  • Glucan 1,4-alpha-Glucosidase / metabolism
  • Hydrolysis
  • Inclusion Bodies / chemistry
  • Inclusion Bodies / metabolism
  • Kinetics
  • Models, Molecular
  • Mutation
  • Protein Conformation
  • Protein Folding
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Structure-Activity Relationship
  • Substrate Specificity
  • Trisaccharides / chemistry*
  • Trisaccharides / metabolism

Substances

  • Bacterial Proteins
  • Recombinant Proteins
  • Trisaccharides
  • maltotriose
  • Glucan 1,4-alpha-Glucosidase