TRBP ensures efficient Dicer processing of precursor microRNA in RNA-crowded environments

Nat Commun. 2016 Dec 9:7:13694. doi: 10.1038/ncomms13694.

Abstract

The RNA-binding protein TRBP is a central component of the Dicer complex. Despite a decade of biochemical and structural studies, the essential functionality of TRBP in microRNA (miRNA) biogenesis remains unknown. Here we show that TRBP is an integral cofactor for time-efficient Dicer processing in RNA-crowded environments. We competed for Dicer processing of pre-miRNA with a large amount of cellular RNA species and found that Dicer-TRBP, but not Dicer alone, remains resilient. To apprehend the mechanism of this substrate selectivity, we use single-molecule fluorescence. The real-time observation reveals that TRBP acts as a gatekeeper, precluding Dicer from engaging with pre-miRNA-like substrates. TRBP acquires the selectivity using the PAZ domain of Dicer, whereas Dicer moderates the RNA-binding affinity of TRBP for fast turnover. This coordinated action between TRBP and Dicer accomplishes an efficient way of discarding pre-miRNA-like substrates.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • HEK293 Cells
  • Humans
  • Intracellular Signaling Peptides and Proteins / metabolism
  • MicroRNAs / metabolism*
  • Multiprotein Complexes / metabolism
  • Nuclear Receptor Coactivators
  • Protein Binding
  • Protein Domains
  • RNA
  • RNA Precursors / metabolism*
  • RNA Processing, Post-Transcriptional / physiology*
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism*
  • Ribonuclease III / metabolism*
  • Transcription, Genetic

Substances

  • Intracellular Signaling Peptides and Proteins
  • MicroRNAs
  • Multiprotein Complexes
  • Nuclear Receptor Coactivators
  • RNA Precursors
  • RNA-Binding Proteins
  • RNA
  • Ribonuclease III