Overcoming a hemihedral twinning problem in tetrahydrofolate-dependent O-demethylase crystals by the microseeding method

Acta Crystallogr F Struct Biol Commun. 2016 Dec 1;72(Pt 12):897-902. doi: 10.1107/S2053230X16018665. Epub 2016 Nov 30.

Abstract

A tetrahydrofolate-dependent O-demethylase, LigM, from Sphingobium sp. SYK-6 was crystallized by the hanging-drop vapour-diffusion method. However, the obtained P3121 or P3221 crystals, which diffracted to 2.5-3.3 Å resolution, were hemihedrally twinned. To overcome the twinning problem, microseeding using P3121/P3221 crystals as microseeds was performed with optimization of the reservoir conditions. As a result, another crystal form was obtained. The newly obtained crystal diffracted to 2.5-3.0 Å resolution and belonged to space group P21212, with unit-cell parameters a = 102.0, b = 117.3, c = 128.1 Å. The P21212 crystals diffracted to better than 2.0 Å resolution after optimizing the cryoconditions. Phasing using the single anomalous diffraction method was successful at 3.0 Å resolution with a Pt-derivative crystal. This experience suggested that microseeding is an effective method to overcome the twinning problem, even when twinned crystals are utilized as microseeds.

Keywords: O-demethylase; Sphingobium sp. SYK-6; cryoprotectant; hemihedral twinning; microseeding; tetrahydrofolate.

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Cloning, Molecular
  • Crystallization
  • Crystallography, X-Ray
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Gene Expression
  • Oxidoreductases, O-Demethylating / chemistry*
  • Oxidoreductases, O-Demethylating / genetics
  • Oxidoreductases, O-Demethylating / metabolism
  • Plasmids / chemistry
  • Plasmids / metabolism
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sphingomonadaceae / chemistry*
  • Sphingomonadaceae / enzymology
  • Tetrahydrofolates / chemistry*
  • Tetrahydrofolates / metabolism
  • X-Ray Diffraction

Substances

  • Bacterial Proteins
  • Recombinant Proteins
  • Tetrahydrofolates
  • Oxidoreductases, O-Demethylating