Performance of a new HPV and biomarker assay in the management of hrHPV positive women: Subanalysis of the ongoing multicenter TRACE clinical trial (n > 6,000) to evaluate POU4F3 methylation as a potential biomarker of cervical precancer and cancer

Int J Cancer. 2017 Mar 1;140(5):1119-1133. doi: 10.1002/ijc.30534.

Abstract

The ongoing Triage and Risk Assessment of Cervical Precancer by Epigenetic Biomarker (TRACE) prospective, multicenter study aimed to provide a clinical evaluation of the CONFIDENCE™ assay, which comprises a human papillomavirus (HPV) DNA and a human epigenetic biomarker test. Between 2013 and 2015 over 6,000 women aged 18 or older were recruited in Hungary. Liquid-based cytology (LBC), high-risk HPV (hrHPV) DNA detection and single target host gene methylation test of the promoter sequence of the POU4F3 gene by quantitative methylation-specific polymerase chain reaction (PCR) were performed from the same liquid-based cytology sample. The current analysis is focused on the baseline cross-sectional clinical results of 5,384 LBC samples collected from subjects aged 25 years or older. The performance of the CONFIDENCE HPV™ test was found to be comparable to the cobas® HPV test with good agreement. When applying the CONFIDENCE Marker™ test alone in hrHPV positives, it showed significantly higher sensitivity with matching specificity compared to LBC-based triage. For CIN3+ histological endpoint in the age group of 25-65 and 30-65, the methylation test of POU4F3 achieved relative sensitivities of 1.74 (95% CI: 1.25-2.33) and 1.64 (95% CI: 1.08-2.27), respectively, after verification bias adjustment. On the basis of our findings, POU4F3 methylation as a triage test of hrHPV positives appears to be a noteworthy method. We can reasonably assume that its quantitative nature offers the potential for a more objective and discriminative risk assessment tool in the prevention and diagnostics of high-grade cervical intraepithelial neoplasia (CIN) lesions and cervical cancer.

Keywords: POU4F3 biomarker; cervical cancer; epigenetics; high-risk HPV; host gene methylation.

Publication types

  • Clinical Trial
  • Multicenter Study

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Biomarkers
  • Biomarkers, Tumor
  • Carcinoma, Squamous Cell / chemistry*
  • Carcinoma, Squamous Cell / virology
  • DNA Methylation
  • DNA Probes, HPV
  • DNA, Viral / analysis
  • Female
  • Homeodomain Proteins / analysis*
  • Homeodomain Proteins / genetics
  • Humans
  • Hungary / epidemiology
  • Middle Aged
  • Papillomaviridae / isolation & purification
  • Papillomavirus Infections / metabolism*
  • Papillomavirus Infections / virology
  • Precancerous Conditions / metabolism*
  • Precancerous Conditions / virology
  • Promoter Regions, Genetic
  • Prospective Studies
  • Real-Time Polymerase Chain Reaction
  • Reproducibility of Results
  • Sensitivity and Specificity
  • Transcription Factor Brn-3C / analysis*
  • Transcription Factor Brn-3C / genetics
  • Triage
  • Uterine Cervical Dysplasia / chemistry
  • Uterine Cervical Dysplasia / metabolism*
  • Uterine Cervical Dysplasia / virology
  • Uterine Cervical Neoplasms / chemistry*
  • Uterine Cervical Neoplasms / virology
  • Young Adult

Substances

  • Biomarkers
  • Biomarkers, Tumor
  • DNA Probes, HPV
  • DNA, Viral
  • Homeodomain Proteins
  • POU4F3 protein, human
  • Transcription Factor Brn-3C