Considerations in applying compressed sensing to in vivo phosphorus MR spectroscopic imaging of human brain at 3T

Med Biol Eng Comput. 2017 Aug;55(8):1303-1315. doi: 10.1007/s11517-016-1591-9. Epub 2016 Nov 8.

Abstract

The purpose of this study was to apply compressed sensing method for accelerated phosphorus MR spectroscopic imaging (31P-MRSI) of human brain in vivo at 3T. Fast 31P-MRSI data of five volunteers were acquired on a 3T clinical MR scanner using pulse-acquire sequence with a pseudorandom undersampling pattern for a data reduction factor of 5.33 and were reconstructed using compressed sensing. Additionally, simulated 31P-MRSI human brain tumor datasets were created to analyze the effects of k-space sampling pattern, data matrix size, regularization parameters of the reconstruction, and noise on the compressed sensing accelerated 31P-MRSI data. The 31P metabolite peak ratios of the full and compressed sensing accelerated datasets of healthy volunteers in vivo were similar according to the results of a Bland-Altman test. The estimated effective spatial resolution increased with reduction factor and sampling more at the k-space center. A lower regularization parameter for both total variation and L1-norm penalties resulted in a better compressed sensing reconstruction of 31P-MRSI. Although the root-mean-square error increased with noise levels, the compressed sensing reconstruction was robust for up to a reduction factor of 10 for the simulated data that had sharply defined tumor borders. As a result, compressed sensing was successfully applied to accelerate 31P-MRSI of human brain in vivo at 3T.

Keywords: 3T; Compressed sensing; Human brain; In vivo; Phosphorus MR spectroscopic imaging.

Publication types

  • Evaluation Study

MeSH terms

  • Biomarkers, Tumor / metabolism*
  • Brain Neoplasms / metabolism*
  • Data Compression / methods*
  • Female
  • Humans
  • Magnetic Resonance Imaging / methods
  • Magnetic Resonance Spectroscopy / methods*
  • Male
  • Middle Aged
  • Molecular Imaging / methods*
  • Phosphorus / pharmacokinetics*
  • Phosphorus Compounds / metabolism*
  • Reproducibility of Results
  • Sensitivity and Specificity
  • Signal Processing, Computer-Assisted

Substances

  • Biomarkers, Tumor
  • Phosphorus Compounds
  • Phosphorus