A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis

Nat Genet. 2016 Dec;48(12):1527-1534. doi: 10.1038/ng.3712. Epub 2016 Nov 7.

Abstract

Some plants acquire competence to flower in spring after experiencing a seasonal temperature drop-winter cold, in a process termed vernalization. In Arabidopsis thaliana, prolonged exposure to cold induces epigenetic silencing of the potent floral repressor locus FLOWERING LOCUS C (FLC) by Polycomb group (PcG) proteins, and this silencing is stably maintained in subsequent growth and development upon return to warm temperatures. Here we show that a cis-regulatory DNA element in the nucleation region for PcG silencing at FLC and two homologous trans-acting epigenome readers, VAL1 and VAL2, control vernalization-mediated FLC silencing. The sequence-specific readers recognize both the cis element (termed the cold memory element) and a repressive mark, trimethylation of histone H3 at lysine 27 (H3K27me3), and directly associate with LIKE HETEROCHROMATIN PROTEIN 1 (LHP1), leading to establishment of the H3K27me3 peak in the nucleation region at FLC during vernalization. Thus, our work describes a mechanism for PcG-mediated silencing by a DNA sequence-specific epigenome reader.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabidopsis / genetics*
  • Arabidopsis / growth & development
  • Arabidopsis Proteins / genetics*
  • Base Sequence
  • Cold Temperature
  • Epigenesis, Genetic / genetics*
  • Flowers / physiology*
  • Gene Expression Regulation, Plant
  • Gene Silencing*
  • Genome, Plant
  • MADS Domain Proteins / genetics*
  • Polycomb-Group Proteins / genetics*
  • Response Elements / genetics*
  • Sequence Homology, Nucleic Acid

Substances

  • Arabidopsis Proteins
  • FLF protein, Arabidopsis
  • MADS Domain Proteins
  • Polycomb-Group Proteins