6 HCV genotyping 9G test and its comparison with VERSANT HCV genotype 2.0 assay (LiPA) for the hepatitis C virus genotyping

J Virol Methods. 2017 Jan:239:1-8. doi: 10.1016/j.jviromet.2016.10.009. Epub 2016 Oct 25.

Abstract

In this article, we describe the 6 HCV Genotyping 9G test and its evaluation by using clinical samples and plasmid DNA standards. In tests with 981 plasmid DNA standards, the 6 HCV Genotyping 9G test showed higher than 92.5% sensitivity and 99.4% specificity. The 6 HCV Genotyping 9G test was compared with the VERSANT HCV Genotype 2.0 assay (LiPA 2.0) for detection and discrimination of HCV genotypes in clinical samples. The results of both tests were verified by genomic sequencing. The 6 HCV Genotyping 9G test demonstrated a 100% agreement with the sequencing results, which was higher than LiPA 2.0. These results indicate that the 6 HCV Genotyping 9G test can be a reliable, sensitive, and accurate diagnostic tool for the correct identification of HCV genotypes in clinical specimens. 6 HCV Genotyping 9G test can genotype six HCV types in 1 PCR in 30min after PCR amplification. The 6 HCV Genotyping 9G test, thus provide critical information to physicians and assist them to apply accurate drug regimen for the effective hepatitis C treatment.

Keywords: 9G DNA technology; HCV genotyping; Hcv; Hepatocellular carcinoma; LiPA 2.0; Liver cirrhosis.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Genotype
  • Genotyping Techniques*
  • Hepacivirus / classification
  • Hepacivirus / genetics*
  • Hepatitis C / blood
  • Hepatitis C / diagnosis*
  • Hepatitis C / virology
  • Humans
  • Liver Neoplasms / virology
  • RNA, Viral / blood
  • RNA, Viral / genetics*
  • RNA, Viral / isolation & purification
  • Reagent Kits, Diagnostic
  • Reproducibility of Results
  • Sensitivity and Specificity
  • Sequence Analysis, DNA
  • Time Factors

Substances

  • RNA, Viral
  • Reagent Kits, Diagnostic