The poly(ADP-ribose)-dependent chromatin remodeler Alc1 induces local chromatin relaxation upon DNA damage

Mol Biol Cell. 2016 Dec 1;27(24):3791-3799. doi: 10.1091/mbc.E16-05-0269. Epub 2016 Oct 12.

Abstract

Chromatin relaxation is one of the earliest cellular responses to DNA damage. However, what determines these structural changes, including their ATP requirement, is not well understood. Using live-cell imaging and laser microirradiation to induce DNA lesions, we show that the local chromatin relaxation at DNA damage sites is regulated by PARP1 enzymatic activity. We also report that H1 is mobilized at DNA damage sites, but, since this mobilization is largely independent of poly(ADP-ribosyl)ation, it cannot solely explain the chromatin relaxation. Finally, we demonstrate the involvement of Alc1, a poly(ADP-ribose)- and ATP-dependent remodeler, in the chromatin-relaxation process. Deletion of Alc1 impairs chromatin relaxation after DNA damage, while its overexpression strongly enhances relaxation. Altogether our results identify Alc1 as an important player in the fast kinetics of the NAD+- and ATP-dependent chromatin relaxation upon DNA damage in vivo.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Culture Techniques
  • Chromatin / physiology
  • Chromatin Assembly and Disassembly / physiology
  • DNA
  • DNA Damage
  • DNA Helicases / metabolism*
  • DNA Helicases / physiology*
  • DNA Repair / physiology
  • DNA-Binding Proteins / metabolism*
  • DNA-Binding Proteins / physiology*
  • Histones / metabolism
  • Humans
  • Nucleosomes
  • Optical Imaging
  • Poly (ADP-Ribose) Polymerase-1 / metabolism
  • Poly Adenosine Diphosphate Ribose / metabolism*
  • Poly Adenosine Diphosphate Ribose / physiology
  • Poly(ADP-ribose) Polymerases / metabolism

Substances

  • Chromatin
  • DNA-Binding Proteins
  • Histones
  • Nucleosomes
  • Poly Adenosine Diphosphate Ribose
  • DNA
  • Poly (ADP-Ribose) Polymerase-1
  • Poly(ADP-ribose) Polymerases
  • DNA Helicases
  • CHD1L protein, human