Plasma micro-nanotextured polymeric micromixer for DNA purification with high efficiency and dynamic range

Anal Chim Acta. 2016 Oct 26:942:58-67. doi: 10.1016/j.aca.2016.09.007. Epub 2016 Sep 22.

Abstract

We present a polymeric microfluidic chip capable of purifying DNA through solid phase extraction. It is designed to be used as a module of an integrated Lab-on-chip platform for pathogen detection, but it can also be used as a stand-alone device. The microfluidic channels are oxygen plasma micro-nanotextured, i.e. randomly roughened in the micro-nano scale, a process creating high surface area as well as high density of carboxyl groups (COOH). The COOH groups together with a buffer that contains polyethylene glycol (PEG), NaCl and ethanol are able to bind DNA on the microchannel surface. The chip design incorporates a mixer so that sample and buffer can be efficiently mixed on chip under continuous flow. DNA is subsequently eluted in water. The chip is able to isolate DNA with high recovery efficiency (96± 11%) in an extremely large dynamic range of prepurified Salmonella DNA as well as from Salmonella cell lysates that correspond to a range of 5 to 1.9 × 108 cells (0.263 fg to 2 × 500 ng). The chip was evaluated via absorbance measurements, polymerase chain reaction (PCR), and gel electrophoresis.

Keywords: DNA purification; High surface area; Microfluidics; Micromixer; Plasma modification.

MeSH terms

  • DNA / isolation & purification*
  • Electrophoresis, Polyacrylamide Gel
  • Lab-On-A-Chip Devices*
  • Microscopy, Fluorescence
  • Nanotechnology*
  • Plasma Gases*
  • Polyethylene Glycols / chemistry*
  • Polymerase Chain Reaction
  • Spectrophotometry, Ultraviolet

Substances

  • Plasma Gases
  • Polyethylene Glycols
  • DNA