Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation

Elife. 2016 Oct 4:5:e16118. doi: 10.7554/eLife.16118.

Abstract

Recent studies suggest that cells make stochastic choices with respect to differentiation or division. However, the molecular mechanism underlying such stochasticity is unknown. We previously proposed that the timing of vertebrate neuronal differentiation is regulated by molecular oscillations of a transcriptional repressor, HES1, tuned by a post-transcriptional repressor, miR-9. Here, we computationally model the effects of intrinsic noise on the Hes1/miR-9 oscillator as a consequence of low molecular numbers of interacting species, determined experimentally. We report that increased stochasticity spreads the timing of differentiation in a population, such that initially equivalent cells differentiate over a period of time. Surprisingly, inherent stochasticity also increases the robustness of the progenitor state and lessens the impact of unequal, random distribution of molecules at cell division on the temporal spread of differentiation at the population level. This advantageous use of biological noise contrasts with the view that noise needs to be counteracted.

Keywords: Hes1; computational biology; developmental biology; miR-9; molecular oscillations; mouse; neural stem cells; single cell heterogeneity; stem cells; stochasticity; systems biology.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Differentiation*
  • Cell Proliferation*
  • Computer Simulation
  • Gene Expression Regulation*
  • Humans
  • MicroRNAs / metabolism*
  • Neurons / physiology*
  • Stem Cells / physiology*
  • Transcription Factor HES-1 / metabolism*

Substances

  • MIRN92 microRNA, human
  • MicroRNAs
  • Transcription Factor HES-1
  • HES1 protein, human