Global transcriptional regulator TrmB family members in prokaryotes

J Microbiol. 2016 Oct;54(10):639-45. doi: 10.1007/s12275-016-6362-7. Epub 2016 Sep 30.

Abstract

Members of the TrmB family act as global transcriptional regulators for the activation or repression of sugar ABC transporters and central sugar metabolic pathways, including glycolytic, gluconeogenic, and other metabolic pathways, and also as chromosomal stabilizers in archaea. As a relatively newly classified transcriptional regulator family, there is limited experimental evidence for their role in Thermococcales, halophilic archaeon Halobacterium salinarum NRC1, and crenarchaea Sulfolobus strains, despite being one of the extending protein families in archaea. Recently, the protein structures of Pyrococcus furiosus TrmB and TrmBL2 were solved, and the transcriptomic data uncovered by microarray and ChIP-Seq were published. In the present review, recent evidence of the functional roles of TrmB family members in archaea is explained and extended to bacteria.

Keywords: TrmB family members; extremophile; global transcriptional regulator; prokaryote; sugar-binding motif.

Publication types

  • Review

MeSH terms

  • ATP-Binding Cassette Transporters / genetics
  • Archaea / classification
  • Archaea / genetics*
  • Archaeal Proteins / genetics*
  • Bacteria / classification
  • Bacteria / genetics*
  • Carbohydrate Metabolism / genetics
  • Gene Expression Profiling
  • Halobacterium salinarum / genetics
  • Pyrococcus furiosus / genetics
  • Regulatory Elements, Transcriptional*
  • Repressor Proteins / chemistry
  • Repressor Proteins / genetics*
  • Repressor Proteins / metabolism
  • Thermococcales / classification
  • Thermococcales / genetics
  • Transcription Factors / classification
  • Transcription Factors / genetics*

Substances

  • ATP-Binding Cassette Transporters
  • Archaeal Proteins
  • Repressor Proteins
  • Transcription Factors