Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum

Wei Wang; Minxuan Xia; Jie Chen; Fenni Deng; Rui Yuan; Xiaopei Zhang; Fafu Shen

doi:10.1016/j.dib.2016.05.025

Data set for phylogenetic tree and RAMPAGE Ramachandran plot analysis of SODs in Gossypium raimondii and G. arboreum

Data Brief. 2016 Jun 18:9:345-8. doi: 10.1016/j.dib.2016.05.025. eCollection 2016 Dec.

Authors

Wei Wang¹, Minxuan Xia¹, Jie Chen¹, Fenni Deng¹, Rui Yuan¹, Xiaopei Zhang¹, Fafu Shen¹

Affiliation

¹ State Key Laboratory of Crop Biology, College of Agronomy, Shandong Agricultural University, Tai'an 271018, Shandong, PR China.

Abstract

The data presented in this paper is supporting the research article "Genome-Wide Analysis of Superoxide Dismutase Gene Family in Gossypium raimondii and G. arboreum" [1]. In this data article, we present phylogenetic tree showing dichotomy with two different clusters of SODs inferred by the Bayesian method of MrBayes (version 3.2.4), "Bayesian phylogenetic inference under mixed models" [2], Ramachandran plots of G. raimondii and G. arboreum SODs, the protein sequence used to generate 3D sructure of proteins and the template accession via SWISS-MODEL server, "SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information." [3] and motif sequences of SODs identified by InterProScan (version 4.8) with the Pfam database, "Pfam: the protein families database" [4].

Keywords: Cotton; Phylogenetic tree; RAMPAGE Ramachandran plot analysis; SOD.