Identification of antisense long noncoding RNAs that function as SINEUPs in human cells

Sci Rep. 2016 Sep 20:6:33605. doi: 10.1038/srep33605.

Abstract

Mammalian genomes encode numerous natural antisense long noncoding RNAs (lncRNAs) that regulate gene expression. Recently, an antisense lncRNA to mouse Ubiquitin carboxyl-terminal hydrolase L1 (Uchl1) was reported to increase UCHL1 protein synthesis, representing a new functional class of lncRNAs, designated as SINEUPs, for SINE element-containing translation UP-regulators. Here, we show that an antisense lncRNA to the human protein phosphatase 1 regulatory subunit 12A (PPP1R12A), named as R12A-AS1, which overlaps with the 5' UTR and first coding exon of the PPP1R12A mRNA, functions as a SINEUP, increasing PPP1R12A protein translation in human cells. The SINEUP activity depends on the aforementioned sense-antisense interaction and a free right Alu monomer repeat element at the 3' end of R12A-AS1. In addition, we identify another human antisense lncRNA with SINEUP activity. Our results demonstrate for the first time that human natural antisense lncRNAs can up-regulate protein translation, suggesting that endogenous SINEUPs may be widespread and present in many mammalian species.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Brain / metabolism
  • Cells, Cultured
  • Computational Biology / methods
  • Gene Expression Profiling
  • Humans
  • Myosin-Light-Chain Phosphatase / genetics
  • Protein Biosynthesis / genetics
  • RNA, Antisense / genetics*
  • RNA, Long Noncoding / genetics*
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Repetitive Sequences, Nucleic Acid

Substances

  • RNA, Antisense
  • RNA, Long Noncoding
  • RNA, Messenger
  • Myosin-Light-Chain Phosphatase
  • PPP1R12A protein, human