Engineering prokaryotic transcriptional activators as metabolite biosensors in yeast

Nat Chem Biol. 2016 Nov;12(11):951-958. doi: 10.1038/nchembio.2177. Epub 2016 Sep 19.

Abstract

Whole-cell biocatalysts have proven a tractable path toward sustainable production of bulk and fine chemicals. Yet the screening of libraries of cellular designs to identify best-performing biocatalysts is most often a low-throughput endeavor. For this reason, the development of biosensors enabling real-time monitoring of production has attracted attention. Here we applied systematic engineering of multiple parameters to search for a general biosensor design in the budding yeast Saccharomyces cerevisiae based on small-molecule binding transcriptional activators from the prokaryote superfamily of LysR-type transcriptional regulators (LTTRs). We identified a design supporting LTTR-dependent activation of reporter gene expression in the presence of cognate small-molecule inducers. As proof of principle, we applied the biosensors for in vivo screening of cells producing naringenin or cis,cis-muconic acid at different levels, and found that reporter gene output correlated with production. The transplantation of prokaryotic transcriptional activators into the eukaryotic chassis illustrates the potential of a hitherto untapped biosensor resource useful for biotechnological applications.

MeSH terms

  • Biosensing Techniques*
  • Prokaryotic Cells / metabolism*
  • Protein Engineering*
  • Saccharomyces cerevisiae / metabolism*
  • Transcription Factors / genetics
  • Transcription Factors / metabolism*

Substances

  • Transcription Factors