CYP101J2, CYP101J3, and CYP101J4, 1,8-Cineole-Hydroxylating Cytochrome P450 Monooxygenases from Sphingobium yanoikuyae Strain B2

Appl Environ Microbiol. 2016 Oct 27;82(22):6507-6517. doi: 10.1128/AEM.02067-16. Print 2016 Nov 15.

Abstract

We report the isolation and characterization of three new cytochrome P450 monooxygenases: CYP101J2, CYP101J3, and CYP101J4. These P450s were derived from Sphingobium yanoikuyae B2, a strain that was isolated from activated sludge based on its ability to fully mineralize 1,8-cineole. Genome sequencing of this strain in combination with purification of native 1,8-cineole-binding proteins enabled identification of 1,8-cineole-binding P450s. The P450 enzymes were cloned, heterologously expressed (N-terminally His6 tagged) in Escherichia coli BL21(DE3), purified, and spectroscopically characterized. Recombinant whole-cell biotransformation in E. coli demonstrated that all three P450s hydroxylate 1,8-cineole using electron transport partners from E. coli to yield a product putatively identified as (1S)-2α-hydroxy-1,8-cineole or (1R)-6α-hydroxy-1,8-cineole. The new P450s belong to the CYP101 family and share 47% and 44% identity with other 1,8-cineole-hydroxylating members found in Novosphingobium aromaticivorans and Pseudomonas putida Compared to P450cin (CYP176A1), a 1,8-cineole-hydroxylating P450 from Citrobacter braakii, these enzymes share less than 30% amino acid sequence identity and hydroxylate 1,8-cineole in a different orientation. Expansion of the enzyme toolbox for modification of 1,8-cineole creates a starting point for use of hydroxylated derivatives in a range of industrial applications.

Importance: CYP101J2, CYP101J3, and CYP101J4 are cytochrome P450 monooxygenases from S. yanoikuyae B2 that hydroxylate the monoterpenoid 1,8-cineole. These enzymes not only play an important role in microbial degradation of this plant-based chemical but also provide an interesting route to synthesize oxygenated 1,8-cineole derivatives for applications as natural flavor and fragrance precursors or incorporation into polymers. The P450 cytochromes also provide an interesting basis from which to compare other enzymes with a similar function and expand the CYP101 family. This could eventually provide enough bacterial parental enzymes with similar amino acid sequences to enable in vitro evolution via DNA shuffling.

MeSH terms

  • Biotransformation
  • Camphor 5-Monooxygenase / classification
  • Camphor 5-Monooxygenase / genetics
  • Camphor 5-Monooxygenase / isolation & purification*
  • Camphor 5-Monooxygenase / metabolism*
  • Citrobacter / enzymology
  • Citrobacter / genetics
  • Cyclohexanols / metabolism*
  • Electron Transport
  • Escherichia coli / genetics
  • Eucalyptol
  • Genome, Bacterial
  • Hydroxylation
  • Industrial Microbiology
  • Monoterpenes / metabolism*
  • Protein Binding
  • Pseudomonas putida / enzymology
  • Pseudomonas putida / genetics
  • Recombinant Proteins / metabolism
  • Sewage / microbiology*
  • Sphingomonadaceae / enzymology*
  • Sphingomonadaceae / genetics
  • Sphingomonadaceae / isolation & purification
  • Sphingomonadaceae / metabolism

Substances

  • Cyclohexanols
  • Monoterpenes
  • Recombinant Proteins
  • Sewage
  • Camphor 5-Monooxygenase
  • Eucalyptol

Grants and funding

Dena Lyras was funded by Australian Research Council (ARC) (FT120100779).