Comparison of Spinach Sex Chromosomes with Sugar Beet Autosomes Reveals Extensive Synteny and Low Recombination at the Male-Determining Locus

J Hered. 2016;107(7):679-685. doi: 10.1093/jhered/esw055. Epub 2016 Aug 25.

Abstract

Spinach (Spinacia oleracea, 2n = 12) and sugar beet (Beta vulgaris, 2n = 18) are important crop members of the family Chenopodiaceae ss Sugar beet has a basic chromosome number of 9 and a cosexual breeding system, as do most members of the Chenopodiaceae ss. family. By contrast, spinach has a basic chromosome number of 6 and, although certain cultivars and genotypes produce monoecious plants, is considered to be a dioecious species. The loci determining male and monoecious sexual expression were mapped to different loci on the spinach sex chromosomes. In this study, a linkage map with 46 mapped protein-coding sequences was constructed for the spinach sex chromosomes. Comparison of the linkage map with a reference genome sequence of sugar beet revealed that the spinach sex chromosomes exhibited extensive synteny with sugar beet chromosomes 4 and 9. Tightly linked protein-coding genes linked to the male-determining locus in spinach corresponded to genes located in or around the putative pericentromeric and centromeric regions of sugar beet chromosomes 4 and 9, supporting the observation that recombination rates were low in the vicinity of the male-determining locus. The locus for monoecism was confined to a chromosomal segment corresponding to a region of approximately 1.7Mb on sugar beet chromosome 9, which may facilitate future positional cloning of the locus.

Keywords: Beta vulgaris; Spinacia oleracea; autosome; centromere; sex chromosome; synteny.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Beta vulgaris / genetics*
  • Chromosome Mapping
  • Chromosomes, Plant*
  • Genetic Linkage
  • Genetic Variation
  • Genome, Plant
  • Microsatellite Repeats
  • Open Reading Frames
  • Quantitative Trait Loci*
  • Recombination, Genetic*
  • Sex Chromosomes*
  • Spinacia oleracea / genetics*
  • Synteny*