Identification and Validation of Gene Expression Pattern and Signature in Patients with Immune Thrombocytopenia

SLAS Discov. 2017 Feb;22(2):187-195. doi: 10.1177/1087057116664029. Epub 2016 Sep 27.

Abstract

In the present study, we sought to define genes associated with immune thrombocytopenia (ITP). Microarray analysis revealed that of 1002 genes associated with ITP, 309 genes had downregulated expression and 693 genes had upregulated expression in patients with ITP. Gene set enrichment analysis revealed that 11 pathways were positively correlated to ITP, such as type I diabetes mellitus, intestinal immune network for IgA production, and oxidative phosphorylation. The messenger RNA expression levels of the indicated genes, including HLA-DRB5, IGHV3-66, IFI27, FAM212A, PLD5, tumor necrosis factor (TNF)-α, interferon-γ, interleukin (IL)-1β, and IL-4, were significantly increased in patients with ITP compared with healthy humans, while MMP8, SLC1A3, CRISP3, THBS1, FMN1, and IL-10 were decreased. In conclusion, the gene expression profile of patients with ITP has established a foundation to study the gene mechanism of ITP progression.

Keywords: cytokine; gene expression profile; immune thrombocytopenia; pathway prediction.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adult
  • Cytokines / genetics*
  • Female
  • Flow Cytometry*
  • Gene Expression Regulation / genetics*
  • Gene Expression Regulation / immunology
  • Humans
  • Interferon-gamma / genetics
  • Interleukin-10 / genetics
  • Interleukin-1beta / genetics
  • Male
  • Middle Aged
  • Purpura, Thrombocytopenic, Idiopathic / genetics*
  • Purpura, Thrombocytopenic, Idiopathic / immunology
  • Purpura, Thrombocytopenic, Idiopathic / pathology
  • Transcriptome / genetics
  • Tumor Necrosis Factor-alpha / genetics

Substances

  • Cytokines
  • IL10 protein, human
  • Interleukin-1beta
  • Tumor Necrosis Factor-alpha
  • Interleukin-10
  • Interferon-gamma